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通过人群数据库分析对东亚人和韩国人种系变异的患病率估计

Prevalence Estimation of the Germline Variant in East Asians and Koreans through Population Database Analysis.

作者信息

Park Jong Eun, Kang Min-Chae, Lee Taeheon, Cho Eun Hye, Jang Mi-Ae, Won Dongju, Park Boyoung, Ki Chang-Seok, Kong Sun-Young

机构信息

Department of Laboratory Medicine, Hanyang University Guri Hospital, Hanyang University College of Medicine, Guri 11923, Republic of Korea.

Targeted Therapy Branch, National Cancer Center, Goyang 10498, Republic of Korea.

出版信息

Cancers (Basel). 2024 Sep 28;16(19):3318. doi: 10.3390/cancers16193318.

Abstract

is a tumor suppressor gene. Heterozygous germline pathogenic variants of significantly increase the lifetime risk of breast cancer and moderately increase the risk of ovarian and pancreatic cancers. This study analyzed the estimated prevalence of variants globally, focusing on East Asian and Korean populations, where limited data were previously available. We examined 125,748 exomes from the Genome Aggregation Database (gnomAD), including 9197 East Asians, and additional data from 5305 individuals in the Korean Variant Archive and 1722 in the Korean Reference Genome Database. All variants were interpreted according to guidelines from the American College of Medical Genetics and Genomics and the Clinical Genome Resource. The global prevalence of variants was 0.18%, with the highest prevalence in Finnish populations (0.41%) and the lowest in Ashkenazi Jewish populations (0.04%). East Asians had a prevalence of 0.09%. By combining data from Korean genome databases and gnomAD totaling 8936 individuals, the overall prevalence of variants in the Korean population was determined to be 0.13%. This study is the first comprehensive investigation of variant prevalence in East Asians and Koreans using gnomAD and Korean genome databases. These findings provide essential reference data for future research and highlight the importance of region-specific genetic studies that will inform genetic counseling and hereditary cancer risk management.

摘要

是一种肿瘤抑制基因。其杂合性种系致病变异会显著增加患乳腺癌的终生风险,并适度增加患卵巢癌和胰腺癌的风险。本研究分析了全球范围内该变异的估计患病率,重点关注此前数据有限的东亚和韩国人群。我们检查了来自基因组聚合数据库(gnomAD)的125748个外显子组,其中包括9197名东亚人,以及来自韩国变异存档库中5305名个体和韩国参考基因组数据库中1722名个体的额外数据。所有该变异均根据美国医学遗传学与基因组学学会和临床基因组资源的指南进行解读。该变异的全球患病率为0.18%,在芬兰人群中患病率最高(0.41%),在阿什肯纳兹犹太人群中最低(0.04%)。东亚人的患病率为0.09%。通过合并来自韩国基因组数据库和gnomAD共8936名个体的数据,韩国人群中该变异的总体患病率确定为0.13%。本研究是首次利用gnomAD和韩国基因组数据库对东亚人和韩国人中该变异患病率进行的全面调查。这些发现为未来研究提供了重要参考数据,并突出了区域特异性基因研究的重要性,这将为遗传咨询和遗传性癌症风险管理提供依据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6a9/11476084/ab37b7f2ad98/cancers-16-03318-g001.jpg

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