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新型吲哚基芳基砜连接腙衍生物作为潜在的HIV-1非核苷逆转录酶抑制剂的合成:分子建模与定量构效关系研究

Synthesis of Novel Indolyl Aryl Sulfone-clubbed Hydrazone Derivatives as Potential HIV-1 Non-Nucleoside Reverse Transcriptase Inhibitors: Molecular Modeling and QSAR Studies.

作者信息

Ali Hazrat, Latif Abdul, Ali Mumtaz, Waqas Muhammad, Ahmad Manzoor, Khalid Asaad, Khan Ajmal, Al-Harrasi Ahmed

机构信息

Department of Chemistry, University of Malakand, Chakdara-18800, Dir Lower, Khyber Pakhtunkhwa, Pakistan.

Natural and Medical Sciences Research Center, University of Nizwa, P.O. Box 33, Birkat Al Mauz, Nizwa-616, Oman.

出版信息

Curr Med Chem. 2024 Oct 14. doi: 10.2174/0109298673318987240926052450.

DOI:10.2174/0109298673318987240926052450
PMID:39411948
Abstract

BACKGROUND

Non-Nucleoside Reverse Transcriptases Inhibitors (NNRTIs) are among the most extensively studied enzymes for understanding the biology of Human Immunodeficiency Viruses (HIV) and designing inhibitors for managing HIV infections. Indolyl aryl sulfones (IASs), an underexplored class of potent NNRTIs, require further exploration for the development of newer drugs for HIV.

AIMS

In this context, we synthesized a series of novels by Indolyl Aryl Sulfones with a hydrazone moiety at the carboxylate site of the indole nucleus. A 2D-QSAR model was developed to predict Reverse Transcriptase inhibitory activity against wild-type RT (WT-RT) enzyme.

METHOD

The model was successfully applied to predict the HIV-1 inhibitory activity of known Indolyl Aryl Sulfones. Considering the reliability, robustness, and reproducibility of the 2D-QSAR model, we made an in-silico prediction of the RT inhibition for our synthesized compounds (1-14).

RESULTS

Molecular docking and dynamics simulations established our synthesized Indolyl Aryl Sulfones, particularly compounds 23, 24, and 28, as effective NNRTIs by stabilizing HIV reverse transcriptase's structure. Binding energy calculations revealed compound 28 as the strongest inhibitor (-43.21 ± 0.09 kcal/mol), followed by 23 (-40.94 ± 0.10 kcal/mol) and 24 (-39.18±0.08 kcal/mol), emphasizing their binding affinity towards HIV reverse transcriptase.

CONCLUSION

In summary, the synthesized Indolyl Aryl Sulfones, particularly compounds 23, 24, and 28, demonstrate significant potential as Non-Nucleoside Reverse Transcriptase Inhibitors (NNRTIs) against HIV. These results highlight the promising role of these compounds in developing novel NNRTIs for managing HIV infections.

摘要

背景

非核苷类逆转录酶抑制剂(NNRTIs)是研究最为广泛的一类酶,用于理解人类免疫缺陷病毒(HIV)的生物学特性并设计治疗HIV感染的抑制剂。吲哚基芳基砜(IASs)是一类尚未充分探索的强效NNRTIs,需要进一步研究以开发新型抗HIV药物。

目的

在此背景下,我们合成了一系列在吲哚核羧酸盐位点带有腙部分的新型吲哚基芳基砜。建立了一个二维定量构效关系(2D-QSAR)模型来预测对野生型逆转录酶(WT-RT)的抑制活性。

方法

该模型成功应用于预测已知吲哚基芳基砜的HIV-1抑制活性。考虑到二维定量构效关系模型的可靠性、稳健性和可重复性,我们对合成的化合物(1-14)进行了逆转录酶抑制的计算机模拟预测。

结果

分子对接和动力学模拟表明,我们合成的吲哚基芳基砜,特别是化合物23、24和28,通过稳定HIV逆转录酶的结构,是有效的NNRTIs。结合能计算表明化合物28是最强的抑制剂(-43.21±0.09千卡/摩尔),其次是23(-40.94±0.10千卡/摩尔)和24(-39.18±0.08千卡/摩尔),强调了它们对HIV逆转录酶的结合亲和力。

结论

总之,合成的吲哚基芳基砜,特别是化合物23、24和28,作为抗HIV的非核苷类逆转录酶抑制剂(NNRTIs)具有显著潜力。这些结果突出了这些化合物在开发新型NNRTIs治疗HIV感染方面的重要作用。

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