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关于马来西亚沙巴波令温泉中细菌群落的16S核糖体RNA宏基因组学数据。

16S rRNA metagenomics data on the bacterial communities in Poring Hot Spring, Sabah, Malaysia.

作者信息

Fazal Bak Zaibah, Yahya Nurshafrina Aida, Ling Clemente Michael Wong Vui, Wei Yew Chee, Leow Thean Chor, Halim Mardani Abdul, Balakrishnan Krishnan Nair, Budiman Cahyo, Amin Zarina

机构信息

Biotechnology Research Institute, University Malaysia Sabah, Jalan UMS, 88400 Kota Kinabalu, Sabah, Malaysia.

Department of Cell and Molecular Biology, Faculty of Biotechnology and Biomolecular Sciences, UPM, 43400 Serdang, Selangor, Malaysia.

出版信息

Data Brief. 2024 Sep 14;57:110935. doi: 10.1016/j.dib.2024.110935. eCollection 2024 Dec.

DOI:10.1016/j.dib.2024.110935
PMID:39429745
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11490759/
Abstract

Hot springs are known to harbor potentially unique microorganisms due to the extreme temperatures in which they thrive and their biotechnologically important enzymes that are active at high temperature, which are beneficial for various industries. Sabah, Malaysia, houses several hot springs, yet knowledge of their microbiological diversity remains limited. Here, the raw sequence data of bacterial communities in a hot spring through metagenomic analysis are revealed. The data were obtained by collecting water and sediment samples from Poring Hot Spring (PHS) in Ranau, Sabah, and their bacterial diversity was analyzed using 16S rRNA amplicon sequencing targeting the V3-V4 regions. The analysis identified bacterial diversity in both water and sediment samples, with 35 phyla, 76 families, and 90 genera in water, and 38 phyla, 114 families, and 128 genera in sediment. Proteobacteria dominated the water samples (87 %), while Cyanobacteria were most abundant in sediment samples (51 %). The most abundant genera in water were Tepidimonas, Hydrogenophilus and Methylothermus, whereas Geitlerinema, Calothrix and Nitrospira dominated the sediment. Sediment samples exhibited higher bacterial richness and diversity compared to water samples, as indicated by α-diversity analysis. Sequences and sample data are deposited in the NCBI Sequence Read Archive under Bioproject ID PRJNA982554 (Accession number: SRX20671661 to SRX20671666) at https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA982554&o=acc_s%3Aa).

摘要

由于温泉中存在极端温度,且有在高温下具有生物活性的重要生物技术酶,因此温泉中可能蕴藏着独特的微生物,这些微生物对各个行业都有益处。马来西亚沙巴有多处温泉,但对其微生物多样性的了解仍然有限。在此,通过宏基因组分析揭示了一处温泉中细菌群落的原始序列数据。这些数据是通过从沙巴兰瑙的波令温泉(PHS)采集水和沉积物样本获得的,并使用针对V3 - V4区域的16S rRNA扩增子测序分析了它们的细菌多样性。分析确定了水和沉积物样本中的细菌多样性,水中有35个门、76个科和90个属,沉积物中有38个门、114个科和128个属。变形菌门在水样中占主导地位(87%),而蓝细菌在沉积物样本中最为丰富(51%)。水中最丰富的属是嗜温单胞菌属、嗜氢菌属和嗜甲基菌属,而鞘丝藻属、眉藻属和硝化螺菌属在沉积物中占主导地位。α多样性分析表明,沉积物样本的细菌丰富度和多样性高于水样。序列和样本数据已存入NCBI序列读取存档库,生物项目编号为PRJNA982554(登录号:SRX20671661至SRX20671666),网址为https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA982554&o=acc_s%3Aa) 。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2e7/11490759/2733851de521/gr7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2e7/11490759/ec118e77bfc8/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2e7/11490759/12c1bd8a5e1e/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2e7/11490759/e36a96b10655/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2e7/11490759/dcb589354928/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2e7/11490759/b4735f316527/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2e7/11490759/ba07095eaa65/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2e7/11490759/2733851de521/gr7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2e7/11490759/ec118e77bfc8/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2e7/11490759/12c1bd8a5e1e/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2e7/11490759/e36a96b10655/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2e7/11490759/dcb589354928/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2e7/11490759/b4735f316527/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2e7/11490759/ba07095eaa65/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2e7/11490759/2733851de521/gr7.jpg

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