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从马里番茄根际分离出的四种与植物相关的自生固氮菌的基因组序列草图

Draft genome sequences of four plant-associated free-living diazotrophs isolated from the rhizosphere of Malian tomato.

作者信息

Bellotti Gabriele, Sanou Paul, Sunzini Piero, Tabaglio Vincenzo, Cocconcelli Pier Sandro, Puglisi Edoardo

机构信息

Department for Sustainable Food Process, Università Cattolica del Sacro Cuore, Piacenza, Italy.

Tamat E. T. S., Perugia, Italy.

出版信息

Microbiol Resour Announc. 2024 Nov 12;13(11):e0056824. doi: 10.1128/mra.00568-24. Epub 2024 Oct 22.

DOI:10.1128/mra.00568-24
PMID:39436066
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11555994/
Abstract

This announcement reports the draft genome sequences of two and two isolated from the rhizosphere of a tomato plant grown in a village in the Republic of Mali. These strains are plant growth-promoting rhizobacteria and are highly valuable to agriculture for their ability to fix atmospheric nitrogen.

摘要

本公告报道了从马里共和国一个村庄种植的番茄植株根际分离出的两种[具体细菌名称1]和两种[具体细菌名称2]的基因组序列草图。这些菌株是促进植物生长的根际细菌，因其具有固定大气中氮的能力而对农业具有极高价值。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e711/11555994/f4e69148f85c/mra.00568-24.f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e711/11555994/f4e69148f85c/mra.00568-24.f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e711/11555994/f4e69148f85c/mra.00568-24.f001.jpg

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本文引用的文献

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Azotobacter: A potential bio-fertilizer for soil and plant health management.固氮菌：一种用于土壤和植物健康管理的潜在生物肥料。
Saudi J Biol Sci. 2020 Dec;27(12):3634-3640. doi: 10.1016/j.sjbs.2020.08.004. Epub 2020 Aug 8.
2
A machine learning-based service for estimating quality of genomes using PATRIC.基于机器学习的 PATRIC 基因组质量估算服务。
BMC Bioinformatics. 2019 Oct 3;20(1):486. doi: 10.1186/s12859-019-3068-y.
3
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.单轮循环器：从短读长和长读长测序数据中解析细菌基因组组装结果
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.
4
RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes.RASTtk：一种用于构建定制注释管道和批量注释基因组的RAST算法的模块化可扩展实现。
Sci Rep. 2015 Feb 10;5:8365. doi: 10.1038/srep08365.
5
PATRIC, the bacterial bioinformatics database and analysis resource.PATRIC，细菌生物信息学数据库和分析资源。
Nucleic Acids Res. 2014 Jan;42(Database issue):D581-91. doi: 10.1093/nar/gkt1099. Epub 2013 Nov 12.