Department of Biology, Faculty of Science, Kyushu University, Fukuoka, Japan.
Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Chiba, Japan.
Elife. 2024 Oct 23;12:RP88456. doi: 10.7554/eLife.88456.
The rates of appearance of new mutations play a central role in evolution. However, mutational processes in natural environments and their relationship with growth rates are largely unknown, particular in tropical ecosystems with high biodiversity. Here, we examined the somatic mutation landscapes of two tropical trees, (slow-growing) and (fast-growing), in central Borneo, Indonesia. Using newly constructed genomes, we identified a greater number of somatic mutations in tropical trees than in temperate trees. In both species, we observed a linear increase in the number of somatic mutations with physical distance between branches. However, we found that the rate of somatic mutation accumulation per meter of growth was 3.7-fold higher in than in . This difference in the somatic mutation rate was scaled with the slower growth rate of compared to resulting in a constant somatic mutation rate per year between the two species. We also found that somatic mutations are neutral within an individual, but those mutations transmitted to the next generation are subject to purifying selection. These findings suggest that somatic mutations accumulate with absolute time and older trees have a greater contribution towards generating genetic variation.
新突变出现的速率在进化中起着核心作用。然而,自然环境中的突变过程及其与生长速率的关系在很大程度上是未知的,特别是在具有高度生物多样性的热带生态系统中。在这里,我们研究了印度尼西亚中婆罗洲中部的两种热带树(生长缓慢)和(生长迅速)的体细胞突变景观。利用新构建的基因组,我们在热带树木中鉴定出比在温带树木中更多的体细胞突变。在这两个物种中,我们观察到体细胞突变的数量随树枝之间的物理距离呈线性增加。然而,我们发现,在中,体细胞突变积累的速率比中每米生长的速率高 3.7 倍。这种体细胞突变率的差异与相比,生长速度较慢,导致两个物种之间每年的体细胞突变率保持恒定。我们还发现,体细胞突变在个体内是中性的,但那些传递给下一代的突变受到纯化选择。这些发现表明,体细胞突变随着绝对时间的积累而积累,而老树对产生遗传变异的贡献更大。