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心脏性猝死和通道病:涉及的基因中罕见剪接位点改变的临床意义背后是什么?

Sudden Cardiac Death and Channelopathies: What Lies behind the Clinical Significance of Rare Splice-Site Alterations in the Genes Involved?

机构信息

Section of Legal Medicine, Department of Biomedical Sciences and Public Health, Polytechnic University of Marche, Via Tronto, 60126 Ancona, Italy.

Legal Medicine Unit, AOU Azienda Ospedaliero Universitaria delle Marche, 60126 Ancona, Italy.

出版信息

Genes (Basel). 2024 Sep 27;15(10):1272. doi: 10.3390/genes15101272.

DOI:10.3390/genes15101272
PMID:39457396
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11507433/
Abstract

: Sudden cardiac death (SCD) is a natural and unexpected death of cardiac origin that occurs within 1 h from the onset of acute symptoms. The major leading causes of SCD are cardiomyopathies and channelopathies. In this review, we focus on channelopathies, inherited diseases caused by mutations affecting genes encoding membrane ion channels (sodium, potassium or calcium channels) or cellular structures that affect Ca availability. The diagnosis of diseases such as long QT, Brugada syndrome, short QT and catecholaminergic polymorphic ventricular tachycardia (CPVT) is still challenging. Currently, genetic testing and next-generation sequencing allow us to identify many rare alterations. However, some non-coding variants, e.g., splice-site variants, are usually difficult to interpret and to classify. : In our review, we searched for splice-site variants of genes involved in channelopathies, focusing on variants of unknown significance (VUSs) registered on ClinVar up to now. : The research led to a high number of splice-site VUSs of genes involved in channelopathies, suggesting the performance of deeper studies. : In order to interpret the correlation between variants and pathologies, we discuss experimental studies, such as RNA sequencing and functional analysis of proteins. Unfortunately, as these in vitro analyses cannot always be performed, we draw attention to in silico studies as future perspectives in genetics. This review has the aim of discussing the potential methods of detection and interpretation of VUSs, bringing out the need for a future reclassification of variants with currently unknown significance.

摘要

: 心源性猝死(SCD)是一种自然的、意外的心脏起源性死亡,发生在急性症状出现后 1 小时内。SCD 的主要主要原因是心肌病和通道病。在这篇综述中,我们重点关注通道病,这是由影响编码膜离子通道(钠、钾或钙通道)或影响 Ca 可用性的细胞结构的基因突变引起的遗传性疾病。长 QT、Brugada 综合征、短 QT 和儿茶酚胺多形性室性心动过速(CPVT)等疾病的诊断仍然具有挑战性。目前,基因检测和下一代测序允许我们识别许多罕见的改变。然而,一些非编码变体,如剪接位点变体,通常难以解释和分类。: 在我们的综述中,我们搜索了与通道病相关的基因的剪接位点变体,重点关注截至目前在 ClinVar 上注册的具有未知意义的变体(VUSs)。: 研究结果显示了大量与通道病相关的基因的剪接位点 VUSs,表明需要进行更深入的研究。: 为了解释变体与病理学之间的相关性,我们讨论了实验研究,如 RNA 测序和蛋白质的功能分析。不幸的是,由于这些体外分析并非总是可行的,我们提请注意作为未来遗传学前景的计算研究。本综述旨在讨论 VUSs 的潜在检测和解释方法,强调需要对目前具有未知意义的变体进行重新分类。

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Detecting and understanding meaningful cancerous mutations based on computational models of mRNA splicing.基于 mRNA 剪接的计算模型检测和理解有意义的致癌突变。
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