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宏基因组测序解析了养殖水域中四川雅鱼()的微生物多样性。

Metagenomic Sequencing Elucidated the Microbial Diversity of Rearing Water Environments for Sichuan Taimen ().

机构信息

Fisheries Research Institute, Sichuan Academy of Agricultural Sciences, Chengdu 611730, China.

Key Laboratory of Bio-Resources and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu 610065, China.

出版信息

Genes (Basel). 2024 Oct 12;15(10):1314. doi: 10.3390/genes15101314.

Abstract

BACKGROUND

Sichuan taimen () is a fish species endemic to China's upper Yangtze River drainage and has significant value as an aquatic resource. It was listed as a first-class state-protected wild animal by the Chinese government due to its very limited distribution and wild population at present.

METHODS

To elucidate the diversity of microorganisms in rearing water environments for , metagenomic sequencing was applied to water samples from the Maerkang and Jiguanshan fish farms, where were reared.

RESULTS

The results revealed that Pseudomonadota was the dominant phylum in the microbial communities of the water samples. Among the shared bacterial groups, Cyanobacteriota, Actinomycetota, Planctomycetota, Nitrospirota, and Verrucomicrobiota were significantly enriched in the water environment of Jiguanshan ( < 0.01), while Bacteroidota was more enriched in that of Maerkang ( < 0.01). Additionally, the Shannon diversity and Simpson index of the microbial community in the water environment of Maerkang were lower than in that of Jiguanshan.

CONCLUSIONS

The present study demonstrated the similarities and differences in the microbial compositions of rearing water environments for , which are expected to benefit the artificial breeding of in the future.

摘要

背景

四川白甲鱼()是中国长江上游特有鱼类,具有重要的水生资源价值。由于分布范围狭窄,野生种群数量有限,被中国政府列为一级保护野生动物。

方法

为了阐明养殖水环境中微生物的多样性,采用宏基因组测序方法对养殖四川白甲鱼的马尔康和鸡冠山水产养殖场的水样进行了分析。

结果

结果表明,假单胞菌门是水样微生物群落中的优势门。在共享的细菌群中,蓝藻门、放线菌门、浮霉菌门、硝化螺旋菌门和疣微菌门在鸡冠山水环境中显著富集(<0.01),而拟杆菌门在马尔康的水环境污染中更为丰富(<0.01)。此外,马尔康水产养殖场的微生物群落的 Shannon 多样性和 Simpson 指数均低于鸡冠山水产养殖场。

结论

本研究表明,养殖四川白甲鱼的水环境中微生物组成存在相似性和差异,这有望为未来四川白甲鱼的人工养殖提供帮助。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4144/11507828/31d179423a03/genes-15-01314-g001.jpg

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