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适应意义重要基因多态性位点的选择对确定乌拉尔地区 L. 种群核苷酸多态性的影响。

Polymorphic Loci of Adaptively Significant Genes Selection for Determining Nucleotide Polymorphism of L. Populations in the Urals.

机构信息

Faculty of Biology, Perm State University, Bukireva, 15, 614990 Perm, Russia.

Perm Agricultural Research Institute-Branch of Perm Federal Research Center Ural Brunch Russian Academy of Sciences, 614532 Perm, Russia.

出版信息

Genes (Basel). 2024 Oct 21;15(10):1343. doi: 10.3390/genes15101343.

Abstract

BACKGROUND

Scots Pine is one of the main forest-forming species in boreal forests; it has great economic and ecological significance. This study aimed to develop and test primers for detecting nucleotide polymorphisms in genes that are promising for detecting adaptive genetic variability in populations of in the Urals and adjacent territories.

OBJECTIVES

The objects of the study were 13 populations of Scots Pine located in the Perm Territory, Chelyabinsk Region, and the Republic of Bashkortostan.

RESULTS

Sixteen pairs of primers to loci of potentially adaptively significant genes were developed, from which three pairs of primers were selected to detect the nucleotide diversity of the studied populations. The indicator of total haplotype diversity determined in the three studied loci varied from 0.620 ( locus) to 0.737 ( locus) and, on average, amounted to 0.662. The nucleotide diversity indicators in in the study region were, on average, low ( = 0.004, = 0.013). Their highest values were found at the locus ( = 0.005; = 0.032), and the lowest were found at the locus ( = 0.003; = 0.002). This indicates that is the most conserved of the three studied loci. In the three studied loci associated with adaptation to environmental factors, 97 polymorphic positions were identified. The 13 populations of are characterized by an average level of genetic diversity ( = 0.662; = 0.004; = 0.013).

CONCLUSIONS

The polymorphic loci of adaptively significant genes of can help identify the adaptive potential of pine forests in conditions of increasing ambient temperatures.

摘要

背景

欧洲赤松是北方森林的主要建群种之一,具有巨大的经济和生态意义。本研究旨在开发和测试用于检测在乌拉尔山脉及周边地区种群中具有潜在适应性遗传变异的基因核苷酸多态性的引物。

目的

研究对象为位于俄罗斯彼尔姆边疆区、车里雅宾斯克州和巴什科尔托斯坦共和国的 13 个欧洲赤松种群。

结果

开发了 16 对针对潜在适应性重要基因座的引物,从中选择了 3 对引物来检测研究种群的核苷酸多样性。在三个研究基因座中确定的总单倍型多样性指标从 0.620(基因座)到 0.737(基因座)不等,平均为 0.662。在研究区域内的 中的核苷酸多样性指标平均较低(=0.004,=0.013)。其最高值出现在 基因座(=0.005;=0.032),最低值出现在 基因座(=0.003;=0.002)。这表明 基因座是三个研究基因座中最保守的。在与适应环境因素相关的三个研究 基因座中,鉴定出 97 个多态性位置。这 13 个 种群的平均遗传多样性水平为(=0.662;=0.004;=0.013)。

结论

具有潜在适应性意义的基因多态性基因座有助于识别在环境温度升高条件下松树林的适应潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/67cd/11507189/3341140d37c5/genes-15-01343-g001.jpg

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