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新型苹果蠹蛾颗粒体病毒(CpGV)菌株的生物防治潜力

Biocontrol Potential of the New Codling Moth Granulovirus (CpGV) Strains.

作者信息

Tsygichko Aleksandra A, Asaturova Anzhela M, Lakhova Tatiana N, Klimenko Alexandra I, Lashin Sergey A, Vasiliev Gennady V

机构信息

Federal State Budgetary Scientific Institution, Federal Research Center of Biological Plant Protection, Krasnodar 350039, Russia.

Institute of Cytology and Genetics, Siberian Branch of Russian Academy of Sciences, Novosibirsk 630090, Russia.

出版信息

Microorganisms. 2024 Sep 30;12(10):1991. doi: 10.3390/microorganisms12101991.

Abstract

The use of CpGV strains as the basis for bioinsecticides is an effective and safe way to control . The research is aimed at the identification and study of new CpGV strains. Objects of identification and bioinformatic analysis: 18 CpGV strains. Sequencing was carried out on a NextSeq550. Genome assembly and annotation were carried out using Spades, Samtools 1.9, MinYS, Pilon, Gfinisher, Quast, and Prokka. Comparative genomic analysis was carried out in relation to the reference genome present in the «Madex Tween» strain-producer (biological standard) according to the average nucleotide identity (ANI) criterion. The presence/absence of IAP, cathepsin, MMP, and chitinase in the genetic sequences of the strains was determined using simply phylogeny. Entomopathogenic activity was assessed against according to the criterion of biological efficacy. Thus, molecular genetic identification revealed that 18 CpGV strains belong to a genus of Betabaculovirus. For all the strains under study ANI values of 99% or more were obtained, and the presence of the cathepsin, chitinase, IAP, and MMP genes was noted. The strains BZR GV 1, BZR GV 3, BZR GV 7, BZR GV 10, and BZR GV L-8 showed the maximum biological efficacy: 100% on the 15th day of observation. Strains BZR GV 4, BZR GV 8, and BZR GV 13 showed efficacy at the level of the «Madex Tween» preparation: 89.5% on the 15th day of observation. The strains with the highest mortality rate of the host insect were identified: BZR GV 9, BZR GV 10, BZR GV L-6, and BZR GV L-8.

摘要

使用CpGV菌株作为生物杀虫剂的基础是控制虫害的一种有效且安全的方法。该研究旨在鉴定和研究新的CpGV菌株。鉴定和生物信息学分析的对象:18株CpGV菌株。在NextSeq550上进行测序。使用Spades、Samtools 1.9、MinYS、Pilon、Gfinisher、Quast和Prokka进行基因组组装和注释。根据平均核苷酸同一性(ANI)标准,对“Madex Tween”菌株生产者(生物标准)中存在的参考基因组进行比较基因组分析。使用简单系统发育法确定菌株遗传序列中IAP、组织蛋白酶、基质金属蛋白酶和几丁质酶的存在与否。根据生物效能标准评估对[未提及具体对象]的昆虫病原活性。因此,分子遗传学鉴定表明18株CpGV菌株属于β杆状病毒属。对于所有研究的菌株,获得了99%或更高的ANI值,并注意到组织蛋白酶、几丁质酶、IAP和基质金属蛋白酶基因的存在。BZR GV 1、BZR GV 3、BZR GV 7、BZR GV 10和BZR GV L-8菌株显示出最大生物效能:在观察第15天为100%。BZR GV 4、BZR GV 8和BZR GV 13菌株显示出与“Madex Tween”制剂相当的效能:在观察第15天为89.5%。确定了宿主昆虫死亡率最高的菌株:BZR GV 9、BZR GV 10、BZR GV L-6和BZR GV L-8。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5388/11510065/5122e98e6b0f/microorganisms-12-01991-g001.jpg

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