Guangdong Provincial Key Laboratory of Animal Molecular Design and Precise Breeding, School of Life Science and Engineering, Foshan University, Foshan, 528225, China.
State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi University, Nanning, 530005, China.
BMC Genomics. 2024 Oct 26;25(1):1004. doi: 10.1186/s12864-024-10912-z.
Buffalo is a globally important livestock species, but its reproductive performance is relatively low than cattles. At present, dominant follicle development specific process and mechanistic role of follicular growth related genes in water buffaloes are not well understood. Therefore, we comprehensively performed transcriptomics of granulosa cells and oocytes from different-sized follicles in water buffalo to identify key candidate genes that influence follicle development and diameter, and further explored the potential regulatory mechanisms of granulosa cells and oocytes in the process of water buffalo follicle development.
In this study, we found918 granulosa cell transcripts and 1401 oocyte transcripts were correlated in follicles of different diameters, and the expression differences were significant. Subsequent enrichment analysis of the co-expressed differentially expressed transcripts identified several genes targeted by long non-coding RNAs (lncRNAs) and associated with follicular development. Notably, the upregulation of BUB1 regulated by MSTRG.41325.4 and interactive action of SMAD2 and SMAD7 might have key regulatory role in follicular development. Additionally, we also detected key differentially expressed genes that potentially influence follicular hormone metabolism and growth, like ID2, CHRD, TGIF2 and MAD2L1, and constructed an interaction network between lncRNA transcripts and mRNAs.
In summary, this study preliminarily revealed the differences in gene expression patterns among buffalo follicles of different sizes and their potential molecular regulatory mechanisms. It provides a new perspective for exploring the mechanism of buffalo follicular dominance and improving buffalo reproductive performance.
水牛是一种具有全球重要意义的家畜物种,但它的繁殖性能相对较低。目前,水牛优势卵泡发育的具体过程及其与卵泡生长相关的基因的作用机制尚不清楚。因此,我们综合了不同大小卵泡的水牛颗粒细胞和卵母细胞的转录组学研究,以鉴定影响卵泡发育和直径的关键候选基因,并进一步探讨了卵泡发育过程中颗粒细胞和卵母细胞的潜在调控机制。
本研究发现,不同直径卵泡中的 918 个颗粒细胞转录本和 1401 个卵母细胞转录本相关,且表达差异显著。随后对差异表达共表达转录本的富集分析鉴定了几个受长链非编码 RNA(lncRNA)靶向并与卵泡发育相关的基因。值得注意的是,BUB1 的上调可能受 MSTRG.41325.4 调控,并且 SMAD2 和 SMAD7 的相互作用可能在卵泡发育中具有关键的调控作用。此外,我们还检测到了一些可能影响卵泡激素代谢和生长的关键差异表达基因,如 ID2、CHRD、TGIF2 和 MAD2L1,并构建了 lncRNA 转录本和 mRNAs 之间的相互作用网络。
综上所述,本研究初步揭示了水牛不同大小卵泡之间基因表达模式的差异及其潜在的分子调控机制。为探索水牛卵泡优势的机制和提高水牛繁殖性能提供了新的视角。