US Geological Survey, Eastern Ecological Science Center, Leetown Research Laboratory, Kearneysville, WV, USA.
Department of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, DC, USA.
BMC Res Notes. 2024 Oct 29;17(1):326. doi: 10.1186/s13104-024-06977-4.
The connectivity and genetic structuring of populations throughout a region influence a species' resilience and probability of recovery from anthropogenic impacts. By gaining a comprehensive understanding of population connectivity, more effective management can be prioritized. To assess the connectivity and population genetic structure of a common cold-water coral species, Desmophyllum pertusum (Lophelia pertusa), we performed Restriction-site Associated DNA Sequencing (RADseq) on individuals from nine sites ranging from submarine canyons off New England to the southeastern coast of the United States (SEUS) and the Gulf of Mexico (GOM). Fifty-seven individuals and 3,180 single-nucleotide polymorphisms (SNPs) were used to assess genetic differentiation.
High connectivity exists among populations along the SEUS, yet these populations were differentiated from those to the north off New England and in Norfolk Canyon along the North Atlantic coast of the United States, as well as those in the GOM. Interestingly, Norfolk Canyon, located just north of North Carolina, and GOM populations exhibited low levels of genetic differentiation, corroborating previous microsatellite analyses and signifying gene flow between these populations. Increasing sample sizes from existing populations and including additional sampling sites over a larger geographic range would help define potential source populations and reveal fine-scale connectivity patterns among D. pertusum populations.
一个地区内的种群连通性和遗传结构影响着物种对人为影响的恢复能力和恢复概率。通过全面了解种群连通性,可以优先进行更有效的管理。为了评估普通冷水珊瑚物种 Desmophyllum pertusum(Lophelia pertusa)的连通性和种群遗传结构,我们对来自新英格兰近海峡谷到美国东南海岸(SEUS)和墨西哥湾(GOM)的九个地点的 57 个个体进行了限制相关 DNA 测序(RADseq)。使用 3,180 个单核苷酸多态性(SNP)来评估遗传分化。
SEUS 沿线的种群之间存在高度连通性,但这些种群与新英格兰北部的种群以及美国北大西洋沿岸的诺福克峡谷(Norfolk Canyon)和 GOM 的种群存在分化。有趣的是,位于北卡罗来纳州北部的诺福克峡谷和 GOM 种群表现出较低水平的遗传分化,与先前的微卫星分析结果相符,表明这些种群之间存在基因流动。增加现有种群的样本量,并在更大的地理范围内增加采样点,将有助于确定潜在的源种群,并揭示 D.pertusum 种群之间的细粒度连通模式。