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Potential Therapeutic Targets in Triple-Negative Breast Cancer Based on Gene Regulatory Network Analysis: A Comprehensive Systems Biology Approach.

作者信息

Ahmadi Maryam, Barkhoda Neda, Alizamir Aida, Taherkhani Amir

机构信息

Clinical Research Development Unit of Fatemiyeh Hospital, Department of Gynecology, School of Medicine, Hamadan University of Medical Sciences, Hamadan, Iran.

Department of Pathology, School of Medicine, Hamadan University of Medical Sciences, Hamadan, Iran.

出版信息

Int J Breast Cancer. 2024 Oct 22;2024:8796102. doi: 10.1155/2024/8796102. eCollection 2024.


DOI:10.1155/2024/8796102
PMID:39473450
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11521586/
Abstract

Triple-negative breast cancer (TNBC) is an aggressive subtype with limited treatment options. This study is aimed at identifying potential therapeutic targets in TNBC using gene regulatory network analysis and a system biology approach. : The GSE38959 dataset was reanalyzed to identify differentially expressed genes (DEGs) in TNBC tissues compared to normal breast samples. Protein-protein interaction networks were constructed, and hub genes were identified. Survival analysis was performed using GEPIA2. Gene regulatory networks were built to identify upstream regulators. Cross-platform verification was conducted using an independent RNA-seq dataset (GSE58135). Expression analysis of prognostic markers in TNBC versus non-TNBC samples was performed using bc-GenExMiner. A total of 943 DEGs were identified in TNBC tissues. CHEK1 and PLK1 were identified as central hub genes, with overexpression correlating with poor prognosis. GABPB1 was identified as the most influential upstream regulator of CHEK1 and PLK1 through gene regulatory network analysis, while JUN exhibited the most interactions among regulators. A total of 302 consistently modulated genes were confirmed through cross-platform verification. The overexpression of CHEK1 and PLK1 in TNBC compared to non-TNBC samples was validated by expression analysis. : This study provides insights into the molecular mechanisms of TNBC and suggests CHEK1, PLK1, and their upstream regulators as potential therapeutic targets for TNBC treatment.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/82c4/11521586/bb1570191371/IJBC2024-8796102.007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/82c4/11521586/ee91b3e6b544/IJBC2024-8796102.001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/82c4/11521586/6b57eb6e04b1/IJBC2024-8796102.002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/82c4/11521586/75ffae8e3349/IJBC2024-8796102.003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/82c4/11521586/731c4c7e015e/IJBC2024-8796102.004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/82c4/11521586/90ed07db54f5/IJBC2024-8796102.005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/82c4/11521586/3d9812157b04/IJBC2024-8796102.006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/82c4/11521586/bb1570191371/IJBC2024-8796102.007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/82c4/11521586/ee91b3e6b544/IJBC2024-8796102.001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/82c4/11521586/6b57eb6e04b1/IJBC2024-8796102.002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/82c4/11521586/75ffae8e3349/IJBC2024-8796102.003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/82c4/11521586/731c4c7e015e/IJBC2024-8796102.004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/82c4/11521586/90ed07db54f5/IJBC2024-8796102.005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/82c4/11521586/3d9812157b04/IJBC2024-8796102.006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/82c4/11521586/bb1570191371/IJBC2024-8796102.007.jpg

相似文献

[1]
Potential Therapeutic Targets in Triple-Negative Breast Cancer Based on Gene Regulatory Network Analysis: A Comprehensive Systems Biology Approach.

Int J Breast Cancer. 2024-10-22

[2]
Identification of potential oncogenes in triple-negative breast cancer based on bioinformatics analyses.

Oncol Lett. 2021-5

[3]
Novel biomarkers identified in triple-negative breast cancer through RNA-sequencing.

Clin Chim Acta. 2022-6-1

[4]
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BMC Cancer. 2024-9-30

[5]
Integrated network analysis and machine learning approach for the identification of key genes of triple-negative breast cancer.

J Cell Biochem. 2018-10-9

[6]
Identification of potential core genes in triple negative breast cancer using bioinformatics analysis.

Onco Targets Ther. 2018-7-18

[7]
Identification of DDIT4 as a potential prognostic marker associated with chemotherapeutic and immunotherapeutic response in triple-negative breast cancer.

World J Surg Oncol. 2023-6-30

[8]
Overexpression of CCNE1 confers a poorer prognosis in triple-negative breast cancer identified by bioinformatic analysis.

World J Surg Oncol. 2021-3-23

[9]
Screening of DNA Damage Repair Genes Involved in the Prognosis of Triple-Negative Breast Cancer Patients Based on Bioinformatics.

Front Genet. 2021-8-2

[10]
Identification of differentially expressed genes between triple and non-triple-negative breast cancer using bioinformatics analysis.

Breast Cancer. 2019-6-13

本文引用的文献

[1]
Cannabinoids and triple-negative breast cancer treatment.

Front Immunol. 2024

[2]
Recent advancement in developing small molecular inhibitors targeting key kinase pathways against triple-negative breast cancer.

Bioorg Med Chem. 2024-10-1

[3]
Advancements in triple-negative breast cancer sub-typing, diagnosis and treatment with assistance of artificial intelligence : a focused review.

J Cancer Res Clin Oncol. 2024-8-6

[4]
Exploring molecular targets: herbal isolates in cervical cancer therapy.

Genomics Inform. 2024-6-26

[5]
Recent Developments in Combination Immunotherapy with Other Therapies and Nanoparticle-Based Therapy for Triple-Negative Breast Cancer (TNBC).

Cancers (Basel). 2024-5-25

[6]
Mesenchymal-like immune-altered is the fourth robust triple-negative breast cancer molecular subtype.

Breast Cancer. 2024-9

[7]
HOMER3 promotes non-small cell lung cancer growth and metastasis primarily through GABPB1-mediated mitochondrial metabolism.

Cell Death Dis. 2023-12-11

[8]
A systems biology approach and in vitro experiment indicated Rapamycin targets key cancer and cell cycle-related genes and miRNAs in triple-negative breast cancer cells.

Mol Carcinog. 2023-12

[9]
Identification of a novel PAK1/HDAC6 dual inhibitor ZMF-23 that triggers tubulin-stathmin regulated cell death in triple negative breast cancer.

Int J Biol Macromol. 2023-11-1

[10]
Icariin Induces Triple-Negative Breast Cancer Cell Apoptosis and Suppresses Invasion by Inhibiting the JNK/c-Jun Signaling Pathway.

Drug Des Devel Ther. 2023

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