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幽门螺杆菌生物膜被 N-酰基高丝氨酸内酯酶干扰:体外和计算机模拟方法。

Helicobacter pylori biofilm interference by N-acyl homoserine lactonases: in vitro and in silico approaches.

机构信息

MGM Advanced Research Institute, Sri Balaji Vidhyapeeth (Deemed to be University), SBV Campus, Pillayarkuppam, Pondicherry, 607402, India.

NyBerMan Bioinformatics Europe, Paddenstoelenlaan 8, 3451 PZ Utrecht, Netherlands.

出版信息

Mol Biol Rep. 2024 Oct 30;51(1):1106. doi: 10.1007/s11033-024-10013-w.

Abstract

BACKGROUND

Qurom quenching enzyme have an impact on treatment efficacy and prevent the recurrence of Helicobacter pylori biofilm-related infections, although it has not been thoroughly investigated in vitro and in silico. The current study aims to characterize the N-acyl homoserine lactonase, the quorum quenching AiiA protein of Bacillus licheniformis against H. pylori biofilm.

METHODS AND RESULTS

In this study, AiiA protein were screened for their anti-biofilm activity, was found to effectively control biofilm formation of H. pylori with concentrations ranging from 2 to 10 µg/mL. According to CLSM and COMSTAT analysis, the untreated substratum had the robust biofilm biomass of 25-18 µM and biovolume of 3-4 mm /mm. The total biofilm biovolume and average biofilm thickness were considerably reduced by 40% with a single application of 10 µg/mL of AiiA protein. The biofilm treated with AiiA exhibited a lower urease and polysaccharides than to the untreated biofilm. Further, in silico analysis, exhibited a greater interaction of AiiA against the outer membrane proteins of H. pylori compared to virulence factors. The conserved domains in the binding pockets of AiiA proteins showed a highest binding affinity proving the catalytic activity of the protein.

CONCLUSION

In this study, the H. pylori biofilm architecture, exopolysaccharide and urease were significantly controlled by our purified N-acyl homoserine lactonase from B. licheniformis. Furthermore, the molecular docking showed the significant interaction between AiiA and key biofilm forming and virulence proteins proved an excellent antibiofilm activity controlling the infections of H. pylori human pathogen.

摘要

背景

群体淬灭酶对治疗效果有影响,并可预防与幽门螺杆菌生物膜相关的感染复发,尽管其在体外和计算机模拟中尚未得到彻底研究。本研究旨在研究地衣芽孢杆菌的 N-酰基高丝氨酸内酯酶(群体淬灭 AiiA 蛋白)对幽门螺杆菌生物膜的作用。

方法和结果

在这项研究中,筛选了 AiiA 蛋白的抗生物膜活性,发现其浓度在 2 至 10 µg/mL 范围内可有效控制幽门螺杆菌生物膜的形成。根据 CLSM 和 COMSTAT 分析,未经处理的基质具有强大的生物膜生物量,为 25-18 µM,生物体积为 3-4 mm/mm。用 10 µg/mL 的 AiiA 蛋白单次处理,可使总生物膜生物体积和平均生物膜厚度减少 40%。与未经处理的生物膜相比,用 AiiA 处理的生物膜的脲酶和多糖含量较低。此外,计算机模拟分析显示,AiiA 与幽门螺杆菌的外膜蛋白的相互作用大于与毒力因子的相互作用。AiiA 蛋白结合口袋中的保守结构域显示出与蛋白质的催化活性更高的结合亲和力。

结论

在这项研究中,我们从地衣芽孢杆菌中纯化的 N-酰基高丝氨酸内酯酶显著控制了幽门螺杆菌生物膜的结构、胞外多糖和脲酶。此外,分子对接显示 AiiA 与关键生物膜形成和毒力蛋白之间存在显著相互作用,证明了其具有良好的控制幽门螺杆菌人类病原体感染的抗生物膜活性。

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