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通过对接、STD-NMR 和分子动力学模拟研究靶向岩藻糖基转移酶-2的药物重定位。

Drug repurposing against fucosyltransferase-2 via docking, STD-NMR, and molecular dynamic simulation studies.

机构信息

International Center for Chemical and Biological Sciences, H. E. J. Research Institute of Chemistry, University of Karachi, Karachi, Pakistan.

Dr. Panjwani Center for Molecular Medicine and Drug Research, International Center for Chemical and Biological Sciences, University of Karachi, Karachi, Pakistan.

出版信息

PLoS One. 2024 Nov 1;19(11):e0308517. doi: 10.1371/journal.pone.0308517. eCollection 2024.

Abstract

Aberrant fucosylation is the hallmark of malignant cell transformation, leading to many cellular events, such as uncontrolled cell proliferation, angiogenesis, tumor cell invasion, and metastasis. This increased fucosylation is caused due to the over-expression of fucosyltransferases (FUTs) that catalyzes the transfer of the fucose (Fuc) residue from GDP-fucose (donor substrate) to various oligosaccharides, glycoproteins, and glycolipids (acceptor substrates). Hence, fucosyltransferases (FUTs) are considered as validated target for the drug discovery against on cancers. In the current study, a drug repurposing approach was deployed to identify new hits against fucosyltransferase 2 (FUT2), using computational and biophysical techniques. A library of 500 US-FDA approved drugs were screened in-silico against fucosyltransferase 2 (FUT2) donor and acceptor sites. Five drugs were predicted as hits, based on their significant docking scores (-5.8 to -8.2), and binding energies (-43 to -51.19 Kcal/mol). Furthermore, STD-NMR highlighted the epitope of these drugs in the binding site of fucosyltransferase 2 (FUT2). Simulation studies provided insights about the binding site of these drugs, and 4 of them, acarbose, ascorbic acid, ibuprofen, and enalaprilat dihydrate, were found as significant binders at the donor binding site of fucosyltransferase 2 (FUT2). Hence, the current study reports the repurposed drugs as potential hits against fucosyltransferase 2 (FUT2). These may be further studied through in-vitro and in-vivo inhibitory and mechanistic studies.

摘要

异常的岩藻糖基化是恶性细胞转化的标志,导致许多细胞事件,如不受控制的细胞增殖、血管生成、肿瘤细胞侵袭和转移。这种岩藻糖基化的增加是由于岩藻糖基转移酶(FUTs)的过度表达引起的,岩藻糖基转移酶(FUTs)催化 GDP-岩藻糖(供体底物)中的岩藻糖(Fuc)残基转移到各种寡糖、糖蛋白和糖脂(受体底物)上。因此,岩藻糖基转移酶(FUTs)被认为是癌症药物发现的有效靶点。在本研究中,采用药物再利用方法,利用计算和生物物理技术,鉴定针对岩藻糖基转移酶 2(FUT2)的新靶点。对 500 种美国 FDA 批准的药物库进行了计算机筛选,以寻找针对岩藻糖基转移酶 2(FUT2)供体和受体部位的新靶点。根据其显著的对接评分(-5.8 至-8.2)和结合能(-43 至-51.19 Kcal/mol),有 5 种药物被预测为命中。此外,STD-NMR 突出了这些药物在岩藻糖基转移酶 2(FUT2)结合部位的表位。模拟研究提供了这些药物结合部位的深入了解,其中 4 种药物,阿卡波糖、抗坏血酸、布洛芬和依那普利拉二水合物,被发现是岩藻糖基转移酶 2(FUT2)供体结合部位的重要结合物。因此,本研究报告了这些再利用药物作为潜在的岩藻糖基转移酶 2(FUT2)靶点。这些药物可能通过体外和体内抑制和机制研究进一步研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d892/11530067/521f3a091dce/pone.0308517.g001.jpg

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