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一种用于具有不确定组成员身份的多种暴露的贝叶斯部分成员模型。

A Bayesian Partial Membership Model for Multiple Exposures with Uncertain Group Memberships.

作者信息

Zavez Alexis E, McSorley Emeir M, Yeates Alison J, Thurston Sally W

机构信息

Department of Biostatistics and Computational Biology, University of Rochester, Rochester, New York, USA.

Nutrition Innovation Centre for Food and Health (NICHE), Ulster University, Coleraine, Northern Ireland.

出版信息

J Agric Biol Environ Stat. 2023 Sep;28(3):377-400. doi: 10.1007/s13253-023-00528-3. Epub 2023 Feb 14.

DOI:10.1007/s13253-023-00528-3
PMID:39492941
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11530226/
Abstract

We present a Bayesian partial membership model that estimates the associations between an outcome, a small number of latent variables, and multiple observed exposures where the number of latent variables is specified . We assign one observed exposure as the sentinel marker for each latent variable. The model allows non-sentinel exposures to have complete membership in one latent group, or partial membership across two or more latent groups. MCMC sampling is used to determine latent group partial memberships for the non-sentinel exposures, and estimate all model parameters. We compare the performance of our model to competing approaches in a simulation study and apply our model to inflammatory marker data measured in a large mother-child cohort of the Seychelles Child Development Study (SCDS). In simulations, our model estimated model parameters with little bias, adequate coverage, and tighter credible intervals compared to competing approaches. Under our partial membership model with two latent groups, SCDS inflammatory marker classifications generally aligned with the scientific literature. Incorporating additional SCDS inflammatory markers and more latent groups produced similar groupings of markers that also aligned with the literature. Associations between covariates and birth weight were similar across latent variable models and were consistent with earlier work in this SCDS cohort.

摘要

我们提出了一种贝叶斯部分隶属模型,该模型用于估计一个结果、少量潜在变量以及多个观察到的暴露因素之间的关联,其中潜在变量的数量是预先指定的。我们为每个潜在变量指定一个观察到的暴露因素作为哨兵标记。该模型允许非哨兵暴露因素完全隶属于一个潜在组,或者部分隶属于两个或更多潜在组。使用马尔可夫链蒙特卡罗(MCMC)抽样来确定非哨兵暴露因素的潜在组部分隶属关系,并估计所有模型参数。在一项模拟研究中,我们将我们模型的性能与其他竞争方法进行了比较,并将我们的模型应用于在塞舌尔儿童发展研究(SCDS)的一个大型母婴队列中测量的炎症标记物数据。在模拟中,与竞争方法相比,我们的模型在估计模型参数时偏差较小、覆盖率足够且可信区间更窄。在我们具有两个潜在组的部分隶属模型下,SCDS炎症标记物分类通常与科学文献一致。纳入更多的SCDS炎症标记物和更多潜在组会产生类似的标记物分组,这些分组也与文献一致。在潜在变量模型中,协变量与出生体重之间的关联相似,并且与该SCDS队列早期的研究结果一致。

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本文引用的文献

1
Modeling the effects of multiple exposures with unknown group memberships: a Bayesian latent variable approach.对具有未知组成员身份的多次暴露的影响进行建模:一种贝叶斯潜在变量方法。
J Appl Stat. 2022;49(4):831-857. doi: 10.1080/02664763.2020.1843611. Epub 2020 Nov 6.
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Bayesian multiple index models for environmental mixtures.贝叶斯多指标环境混合物模型。
Biometrics. 2023 Mar;79(1):462-474. doi: 10.1111/biom.13569. Epub 2021 Oct 12.
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Assessment of Grouped Weighted Quantile Sum Regression for Modeling Chemical Mixtures and Cancer Risk.群组加权分位数总和回归在化学混合物和癌症风险建模中的评估。
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Associations between maternal inflammation during pregnancy and infant birth outcomes in the Seychelles Child Development Study.在塞舌尔儿童发展研究中,孕期母亲炎症与婴儿出生结局之间的关联。
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J Agric Biol Environ Stat. 2015 Mar;20(1):100-120. doi: 10.1007/s13253-014-0180-3. Epub 2014 Dec 24.
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Associations of maternal immune response with MeHg exposure at 28 weeks' gestation in the Seychelles Child Development Study.母亲在 28 孕周时的免疫反应与甲基汞暴露的关联,在塞舌尔儿童发育研究中。
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Prenatal exposure to methyl mercury from fish consumption and polyunsaturated fatty acids: associations with child development at 20 mo of age in an observational study in the Republic of Seychelles.孕期因食用鱼类而接触甲基汞与多不饱和脂肪酸:在塞舌尔共和国的一项观察性研究中与20月龄儿童发育的关联
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Bayesian kernel machine regression for estimating the health effects of multi-pollutant mixtures.用于估计多污染物混合物健康影响的贝叶斯核机器回归
Biostatistics. 2015 Jul;16(3):493-508. doi: 10.1093/biostatistics/kxu058. Epub 2014 Dec 22.
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Finding vulnerable subpopulations in the Seychelles Child Development Study: effect modification with latent groups.在塞舌尔儿童发展研究中寻找脆弱亚群体:潜在群体的效应修正
Stat Methods Med Res. 2017 Apr;26(2):809-822. doi: 10.1177/0962280214560044. Epub 2014 Dec 14.