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时间对合成细菌群落入侵的影响。

Impact of timing on the invasion of synthetic bacterial communities.

机构信息

Committee on Microbiology, University of Chicago, 924 East 57th Street, Chicago, IL 60637, United States.

Center for Genomics and System Biology, Department of Biology, New York University, 12 Waverly Place, New York, NY 10003, United States.

出版信息

ISME J. 2024 Jan 8;18(1). doi: 10.1093/ismejo/wrae220.

Abstract

Microbial communities regularly experience ecological invasions that can lead to changes in composition and function. Factors thought to impact susceptibility to invasions, such as diversity and resource use, vary over the course of community assembly. We used synthetic bacterial communities to evaluate the success and impact of invasions occurring at different times during the community assembly process. Fifteen distinct communities were subjected to each of three bacterial invaders at the initial assembly of the community ("initial invasion"), 24 h into community assembly ("early invasion"), when the community was still undergoing transient dynamics, and 7 days into community assembly ("late invasion"), once the community had settled into its final composition. Communities were passaged daily and characterized through sequencing after reaching a stable composition. Invasions often failed to persist over time, particularly in higher richness communities. However, invasions had their largest effect on composition when they occurred before a community had settled into a stable composition. We found instances where an invader was ultimately excluded yet had profound and long-lasting effects on invaded communities. Invasion outcome was positively associated with lower community richness and resource use efficiency by the community, which varied throughout assembly. Our results demonstrate that microbial communities experiencing transient community dynamics are more affected by, and in some instances prone to, invasion, a finding relevant to efforts to modify the composition of microbial communities.

摘要

微生物群落经常经历生态入侵,这可能导致群落组成和功能发生变化。被认为会影响易感性的因素,如多样性和资源利用,在群落组装过程中会发生变化。我们使用合成细菌群落来评估在群落组装过程的不同时间点发生的入侵的成功和影响。十五个不同的群落都受到三种细菌入侵者的影响,分别是在群落最初组装时(“初始入侵”)、群落组装 24 小时后(“早期入侵”),此时群落仍处于瞬态动力学状态,以及群落组装 7 天后(“晚期入侵”),此时群落已经稳定下来。群落每天传递并在达到稳定组成后通过测序进行表征。入侵往往无法长时间持续,特别是在较高丰富度的群落中。然而,当入侵发生在群落稳定组成之前时,它们对组成的影响最大。我们发现了一些入侵最终被排除但对被入侵群落产生深远而持久影响的情况。入侵结果与群落的较低丰富度和资源利用效率呈正相关,而这些因素在整个组装过程中都在变化。我们的结果表明,经历瞬态群落动态的微生物群落更容易受到入侵的影响,并且在某些情况下更容易受到入侵的影响,这一发现与努力改变微生物群落的组成有关。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b5b/11605641/f0f74ddbf52f/wrae220f1.jpg

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