协同作用如何影响转录爆发。

Better together: how cooperativity influences transcriptional bursting.

机构信息

Division of Gene Regulation, the Netherlands Cancer Institute, Oncode Institute, Plesmanlaan 121, 1066 CX Amsterdam, the Netherlands.

Division of Gene Regulation, the Netherlands Cancer Institute, Oncode Institute, Plesmanlaan 121, 1066 CX Amsterdam, the Netherlands.

出版信息

Curr Opin Genet Dev. 2024 Dec;89:102274. doi: 10.1016/j.gde.2024.102274. Epub 2024 Nov 5.

Abstract

Transcriptional bursting refers to the stochastic transition of a promoter between transcriptionally active and inactive states. This dynamic process is highly regulated by the dynamics of transcription factor binding to DNA, their interactions with coactivators, and the 3D interactions between promoters, condensates, and enhancers. In this mini-review, we discuss recent insights into the kinetics of transcription factors and cofactors in both simple and complex regulatory environments to understand their impact on transcriptional bursting. We examine the novel concept of transcription factor exchange and relate it to different cooperativity models. Finally, we discuss recent live-cell imaging studies on the regulation of transcriptional bursting by enhancers and transcriptional condensates.

摘要

转录爆发是指启动子在转录活跃和不活跃状态之间的随机转换。这个动态过程受到转录因子与 DNA 结合的动力学、它们与共激活因子的相互作用以及启动子、凝聚物和增强子之间的 3D 相互作用的高度调控。在这篇迷你综述中,我们讨论了最近在简单和复杂调控环境中对转录因子和辅助因子动力学的深入了解,以了解它们对转录爆发的影响。我们研究了转录因子交换的新概念,并将其与不同的协同作用模型联系起来。最后,我们讨论了最近关于增强子和转录凝聚物对转录爆发调控的活细胞成像研究。

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