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用于濒危鱼类物种饮食分析的粪便DNA宏条形码技术

Faecal DNA Metabarcoding for Diet Analysis of Endangered Fish Species, .

作者信息

Kim Kanghui, You Kyung-A, Kim Jeong-Hui, Park Sang-Hyeon, Baek Seung-Ho, Jeong Kwang-Seuk, Joo Gea-Jae, Jo Hyunbin

机构信息

Department of Pet Health Care, Busan Health University, Busan 49318, Republic of Korea.

Water Environment Research Department, National Institute of Environmental Research, Incheon 22689, Republic of Korea.

出版信息

Animals (Basel). 2024 Oct 25;14(21):3083. doi: 10.3390/ani14213083.

Abstract

Understanding the ecological characteristics of endangered species is essential for their management and conservation. The dark sleeper () is a carnivorous freshwater fish that has been designated an endangered species in South Korea because of its highly restricted habitat range and small population size. However, ecological research on prey items for this species remains severely limited globally, posing challenges for establishing conservation measures such as translocation management. In this study, the food sources and feeding strategies of were identified through non-invasive faecal DNA metabarcoding. A total of 24 specimens were collected from Sanyang Stream on Geoje Island, and faecal DNA was amplified using mitochondrial cytochrome c oxidase I (COI) primer. As a result, 13 prey items were identified, comprising fish and benthic invertebrates. Dietary metrics revealed the overall food composition and major food source of , and the Costello method enabled graphical diet analysis, suggesting that is a generalist, feeding on a wide variety of food sources. The food selectivity index suggested that prefers specific prey items, such as genus , (fish), (gastropod), and (mayfly). This molecular method facilitated the diet analysis of an endangered fish species that cannot undergo dissection, providing crucial information for their management, particularly regarding translocation efforts.

摘要

了解濒危物种的生态特征对于其管理和保护至关重要。暗体眠鱼()是一种肉食性淡水鱼,因其栖息地范围高度受限且种群规模较小,在韩国被列为濒危物种。然而,全球范围内针对该物种猎物的生态研究仍然极为有限,这给制定诸如易地保护管理等保护措施带来了挑战。在本研究中,通过非侵入性粪便DNA元条形码技术确定了暗体眠鱼的食物来源和摄食策略。从巨济岛的三阳溪共采集了24份暗体眠鱼标本,并使用线粒体细胞色素c氧化酶I(COI)引物扩增粪便DNA。结果,鉴定出13种猎物,包括鱼类和底栖无脊椎动物。饮食指标揭示了暗体眠鱼的整体食物组成和主要食物来源,并且Costello方法实现了图形化饮食分析,表明暗体眠鱼是一种广食性动物,以多种食物来源为食。食物选择性指数表明暗体眠鱼偏好特定的猎物,如属、(鱼类)、(腹足纲动物)和(蜉蝣)。这种分子方法有助于对无法进行解剖的濒危鱼类进行饮食分析,为其管理,特别是易地保护工作提供了关键信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8331/11545592/ce74eb5002de/animals-14-03083-g0A1.jpg

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