文献检索文档翻译深度研究
Suppr Zotero 插件Zotero 插件
邀请有礼套餐&价格历史记录

新学期,新优惠

限时优惠:9月1日-9月22日

30天高级会员仅需29元

1天体验卡首发特惠仅需5.99元

了解详情
不再提醒
插件&应用
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
高级版
套餐订阅购买积分包
AI 工具
文献检索文档翻译深度研究
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2025

建立肺腺癌中潜在的 lncRNA 相关枢纽基因的竞争内源性 RNA。

Establishment of potential lncRNA-related hub genes involved competitive endogenous RNA in lung adenocarcinoma.

机构信息

Department of Laboratory Medicine, First Affiliated Hospital of Huzhou University, Huzhou, 313000, Zhejiang, China.

Department of Pathology, First Affiliated Hospital of Huzhou University, Huzhou, 313000, Zhejiang, China.

出版信息

BMC Cancer. 2024 Nov 9;24(1):1371. doi: 10.1186/s12885-024-13144-2.


DOI:10.1186/s12885-024-13144-2
PMID:39522011
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11549862/
Abstract

Long non-coding RNAs (lncRNAs) have a notable role in the diagnosis and prognosis of cancer. However, the associations between lncRNA-related hub genes (LRHGs) expression and the corresponding outcomes have not been fully understood in lung adenocarcinoma (LUAD). Here, a total of 71 patients diagnosed with LUAD and 60 healthy volunteers at The First Affiliated Hospital of Huzhou University from April, 2023 to December, 2023 were enrolled in the present study. A LRHGs model was established using least absolute shrinkage and selection operator analyses of The Cancer Genome Atlas-LUAD datasets. The underlying mechanisms of the LRHGs were investigated via Gene Set Enrichment Analysis and Gene Set Variation Analysis. Additionally, the diagnostic role of serum HOXD cluster antisense RNA 2 (HOXD-AS2) was assessed by receiver operating characteristic (ROC) curve analysis. Lastly, TCGA-LUAD samples were divided into high- and low-HOXD-AS2 expression groups based on the median expression. The associations between HOXD-AS2 expression and miR-4538 as well as Calmodulin-Dependent Protein Kinase Type II subunit Beta (CAMK2B) levels were conducted through Pearson correlation analysis. A comprehensive analysis identified 141 differentially expressed lncRNAs between 539 LUAD tissues and 59 normal samples. A prognostic marker for overall survival was established by constructing a predictive signature consisting of 9 LRHGs. Subsequently, 474 LUAD samples were categorized into a high or low-risk group based on the median of the risk score. An independent prognostic model was constructed to confirm the validity of this categorization. Further comparisons of the clinicopathological features and LRHG-related pathways were performed between the two groups. Examinations of LRHG expression in two LUAD clusters and of the association between LRHG expression and immune infiltration were also conducted. HOXD-AS2 expression was shown to be elevated in LUAD tissues compared with matched normal tissues, and the serum HOXD-AS2 level was also notably increased in LUAD samples compared with healthy controls. The results of the ROC analysis indicated that the sensitivity and specificity of HOXD-AS2 were higher than that of cytokeratin-19 fragment (CYFRA21-1), which is a serum marker for LUAD. Pearson analyses indicated that miR-4538 level was negatively associated with HOXD-AS2 expression, but CAMK2B level showed positive correlation in LUAD. The results of the present study therefore indicated that the constructed LRHG model, particularly HOXD-AS2, could independently diagnose and predict the prognosis of LUAD, which suggested the underlying mechanism of the HOXD-AS2/miR-4538/CAMK2B, and might offer efficient strategies for LUAD treatment.

摘要

长链非编码 RNA(lncRNA)在癌症的诊断和预后中具有显著作用。然而,lncRNA 相关枢纽基因(LRHG)表达与肺腺癌(LUAD)相应结果之间的关联尚未完全阐明。本研究共纳入了 2023 年 4 月至 2023 年 12 月在湖州大学第一附属医院诊断为 LUAD 的 71 例患者和 60 名健康志愿者。使用癌症基因组图谱-LUAD 数据集的最小绝对收缩和选择算子分析建立了 LRHG 模型。通过基因集富集分析和基因集变异分析研究了 LRHG 的潜在机制。此外,通过接收者操作特征(ROC)曲线分析评估了血清 HOXD 簇反义 RNA 2(HOXD-AS2)的诊断作用。最后,根据中位数表达,将 TCGA-LUAD 样本分为高表达和低表达 HOXD-AS2 组。通过 Pearson 相关性分析,对 HOXD-AS2 表达与 miR-4538 以及钙调蛋白依赖性蛋白激酶 II 亚基β(CAMK2B)水平之间的关系进行了研究。综合分析确定了 539 例 LUAD 组织和 59 例正常样本之间的 141 个差异表达 lncRNA。通过构建由 9 个 LRHG 组成的预测特征,建立了用于总体生存的预后标志物。随后,根据风险评分的中位数,将 474 例 LUAD 样本分为高风险或低风险组。构建了一个独立的预后模型来确认这种分类的有效性。进一步比较了两组之间的临床病理特征和 LRHG 相关通路。还对两个 LUAD 簇中的 LRHG 表达进行了检查,并对 LRHG 表达与免疫浸润之间的关系进行了研究。与匹配的正常组织相比,LUAD 组织中 HOXD-AS2 的表达升高,与健康对照组相比,LUAD 样本中的血清 HOXD-AS2 水平也显著升高。ROC 分析结果表明,HOXD-AS2 的敏感性和特异性均高于 LUAD 的血清标志物细胞角蛋白 19 片段(CYFRA21-1)。Pearson 分析表明,miR-4538 水平与 HOXD-AS2 表达呈负相关,而在 LUAD 中 CAMK2B 水平呈正相关。因此,本研究结果表明,构建的 LRHG 模型,特别是 HOXD-AS2,可以独立诊断和预测 LUAD 的预后,这提示了 HOXD-AS2/miR-4538/CAMK2B 的潜在机制,并可能为 LUAD 的治疗提供有效的策略。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7dd3/11549862/5b17fd5b4aec/12885_2024_13144_Fig12_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7dd3/11549862/5ee0d22fee2d/12885_2024_13144_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7dd3/11549862/6486e47cd70e/12885_2024_13144_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7dd3/11549862/37ed8e675237/12885_2024_13144_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7dd3/11549862/bda6b7005622/12885_2024_13144_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7dd3/11549862/c0f90768b6aa/12885_2024_13144_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7dd3/11549862/b0df5c451ddf/12885_2024_13144_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7dd3/11549862/1dd573d29d54/12885_2024_13144_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7dd3/11549862/4231492a3de3/12885_2024_13144_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7dd3/11549862/9c68c4223f86/12885_2024_13144_Fig9_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7dd3/11549862/9a66e446f33f/12885_2024_13144_Fig10_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7dd3/11549862/cdb063896498/12885_2024_13144_Fig11_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7dd3/11549862/5b17fd5b4aec/12885_2024_13144_Fig12_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7dd3/11549862/5ee0d22fee2d/12885_2024_13144_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7dd3/11549862/6486e47cd70e/12885_2024_13144_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7dd3/11549862/37ed8e675237/12885_2024_13144_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7dd3/11549862/bda6b7005622/12885_2024_13144_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7dd3/11549862/c0f90768b6aa/12885_2024_13144_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7dd3/11549862/b0df5c451ddf/12885_2024_13144_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7dd3/11549862/1dd573d29d54/12885_2024_13144_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7dd3/11549862/4231492a3de3/12885_2024_13144_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7dd3/11549862/9c68c4223f86/12885_2024_13144_Fig9_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7dd3/11549862/9a66e446f33f/12885_2024_13144_Fig10_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7dd3/11549862/cdb063896498/12885_2024_13144_Fig11_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7dd3/11549862/5b17fd5b4aec/12885_2024_13144_Fig12_HTML.jpg

相似文献

[1]
Establishment of potential lncRNA-related hub genes involved competitive endogenous RNA in lung adenocarcinoma.

BMC Cancer. 2024-11-9

[2]
Predictions of the dysregulated competing endogenous RNA signature involved in the progression of human lung adenocarcinoma.

Cancer Biomark. 2020

[3]
A methylation-related lncRNA-based prediction model in lung adenocarcinomas.

Clin Respir J. 2024-8

[4]
USF1-induced overexpression of long noncoding RNA WDFY3-AS2 promotes lung adenocarcinoma progression via targeting miR-491-5p/ZNF703 axis.

Mol Carcinog. 2020-4-10

[5]
Comprehensive analysis of prognostic biomarkers in lung adenocarcinoma based on aberrant lncRNA-miRNA-mRNA networks and Cox regression models.

Biosci Rep. 2020-1-31

[6]
Potential Prognostic Biomarkers of Lung Adenocarcinoma Based on Bioinformatic Analysis.

Biomed Res Int. 2021

[7]
Comprehensive analysis of TPX2-related ceRNA network as prognostic biomarkers in lung adenocarcinoma.

Int J Med Sci. 2020

[8]
Comprehensive Analysis of Aberrantly Expressed Profiles of lncRNAs and miRNAs with Associated ceRNA Network in Lung Adenocarcinoma and Lung Squamous Cell Carcinoma.

Pathol Oncol Res. 2020-7

[9]
Disulfidptosis-related lncRNAs signature predicting prognosis and immunotherapy effect in lung adenocarcinoma.

Aging (Albany NY). 2024-6-10

[10]
Integrative Analysis of Three Novel Competing Endogenous RNA Biomarkers with a Prognostic Value in Lung Adenocarcinoma.

Biomed Res Int. 2020

引用本文的文献

[1]
Single-cell RNA sequencing technology was employed to construct a risk prediction model for genes associated with pyroptosis and ferroptosis in lung adenocarcinoma.

Respir Res. 2025-7-18

[2]
Development and validation of prognostic models based on cell cycle-related signatures for predicting the prognosis of patients with lung adenocarcinoma.

Transl Cancer Res. 2025-5-30

本文引用的文献

[1]
Upregulated lncRNA LINC01128 in colorectal cancer accelerates cell growth and predicts malignant prognosis through sponging miR-363-3p.

J Cancer Res Clin Oncol. 2024-5-26

[2]
Long non-coding RNA RP11-197K6.1 as ceRNA promotes colorectal cancer progression via miR-135a-5p/DLX5 axis.

J Transl Med. 2024-5-17

[3]
Development of m6A/m5C/m1A regulated lncRNA signature for prognostic prediction, personalized immune intervention and drug selection in LUAD.

J Cell Mol Med. 2024-4

[4]
Crosstalk among disulfidptosis-related lncRNAs in lung adenocarcinoma reveals a correlation with immune profile and clinical prognosis.

Noncoding RNA Res. 2024-3-20

[5]
A novel tumor mutation-related long non-coding RNA signature for predicting overall survival and immunotherapy response in lung adenocarcinoma.

Heliyon. 2024-3-22

[6]
Identification and validation of tryptophan metabolism-related lncRNAs in lung adenocarcinoma prognosis and immune response.

J Cancer Res Clin Oncol. 2024-4-1

[7]
Single-cell RNA sequencing integrated with bulk RNA sequencing analysis identifies a tumor immune microenvironment-related lncRNA signature in lung adenocarcinoma.

BMC Biol. 2024-3-22

[8]
Hijacking and rewiring of host CircRNA/miRNA/mRNA competitive endogenous RNA (ceRNA) regulatory networks by oncoviruses during development of viral cancers.

Rev Med Virol. 2024-3

[9]
PANoptosis-related long non-coding RNA signature to predict the prognosis and immune landscapes of pancreatic adenocarcinoma.

Biochem Biophys Rep. 2023-12-7

[10]
Dysregulated immune and metabolic pathways are associated with poor survival in adult acute myeloid leukemia with CEBPA bZIP in-frame mutations.

Blood Cancer J. 2024-1-23

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

推荐工具

医学文档翻译智能文献检索