Faculty of Engineering and Natural Sciences, Sabanci University, İstanbul, Türkiye.
TÜBİTAK Research Institute for Fundamental Sciences, Gebze, Türkiye.
PLoS Comput Biol. 2024 Nov 12;20(11):e1012591. doi: 10.1371/journal.pcbi.1012591. eCollection 2024 Nov.
Despite advancements in understanding the structure and functions of the Calcium Sensing Receptor (CaSR), gaps persist in our knowledge of the specific functions of its residues. In this study, we used phylogeny-based techniques to identify functionally equivalent orthologs of CaSR, predict residue significance, and compute specificity-determining position (SDP) scores to understand its evolutionary basis. The analysis revealed exceptional conservation of the CaSR subfamily, emphasizing the critical role of residues with high SDP scores in receptor activation and pathogenicity. To further enhance the findings, gradient-boosting trees were applied to differentiate between gain- and loss-of-function mutations responsible for hypocalcemia and hypercalcemia. Lastly, we investigated the importance of these mutations in the context of receptor activation dynamics. In summary, through comprehensive exploration of the evolutionary history of the CaSR subfamily, coupled with innovative phylogenetic methodologies, we identified activating and inactivating residues, providing valuable insights into the regulation of calcium homeostasis and its connections to associated disorders.
尽管我们对钙敏感受体 (CaSR) 的结构和功能有了更深入的了解,但仍有一些关于其残基具体功能的知识空白。在这项研究中,我们使用基于系统发育的技术来识别 CaSR 的功能等效直系同源物,预测残基的重要性,并计算特异性决定位置 (SDP) 分数,以了解其进化基础。分析表明 CaSR 亚家族的高度保守性,这强调了具有高 SDP 分数的残基在受体激活和致病性方面的关键作用。为了进一步增强研究结果,我们应用梯度提升树来区分导致低钙血症和高钙血症的功能获得和功能丧失突变。最后,我们研究了这些突变在受体激活动力学中的重要性。总之,通过全面探索 CaSR 亚家族的进化历史,结合创新的系统发育方法,我们确定了激活和失活残基,为钙稳态的调节及其与相关疾病的联系提供了有价值的见解。