Perrier Charles, Allio Rémi, Legeai Fabrice, Gautier Mathieu, Bénéluz Frédéric, Marande William, Theron Anthony, Rodde Nathalie, Herrera Melfran, Sauné Laure, Parrinello Hugues, McClure Melanie, Arias Mónica
UMR CBGP, INRAE, CIRAD, IRD, Institut Agro, Université Montpellier, Montpellier, France.
BIPAA IGEPP, INRAE Institut Agro Univ Rennes Rennes France.
J Hered. 2025 Jun 2;116(3):344-353. doi: 10.1093/jhered/esae069.
We present the first nuclear genome assembly and a complete mitogenome for Hylesia metabus (Arthropoda; Insecta; Lepidoptera; Saturniidae). The assembled nuclear genome sequence is 1,271 Mb long, which is among the 10 largest lepidopteran genome assemblies published to date. It is scaffolded in 31 pseudo chromosomes, has a BUSCO score of 99.5%, and has a highly conserved synteny compared with phylogenetically close species. Repetitive elements make up 67% of the nuclear genome and are mainly located in intergenic regions, among which LINEs were predominant, with CR1-Zenon being the most abundant. Phylogenetic and comparative analyses of H. metabus assembly and 17 additional Saturniidae and Sphingidae assemblies suggested that an accumulation of repetitive elements likely led to the increased size of H. metabus' genome. Gene annotation using Helixer identified 26,122 transcripts. The Z scaffold was identified using both a synteny analysis and variations of coverage for two resequenced male and female H. metabus. The H. metabus nuclear genome and mitogenome assemblies can be found and browsed on the BIPAA website and constitute useful resources for future population and comparative genomics studies.
我们展示了赫氏暮眼蝶(节肢动物;昆虫纲;鳞翅目;天蚕蛾科)的首个核基因组组装序列和完整的线粒体基因组。组装后的核基因组序列长度为12.71亿碱基对,是迄今为止已发表的10个最大的鳞翅目基因组组装序列之一。它被构建成31条假染色体,BUSCO评分为99.5%,与系统发育关系较近的物种相比,具有高度保守的同线性。重复元件占核基因组的67%,主要位于基因间区域,其中长散在核元件(LINEs)占主导地位,CR1-Zenon最为丰富。对赫氏暮眼蝶组装序列以及另外17个天蚕蛾科和天蛾科组装序列进行的系统发育和比较分析表明,重复元件的积累可能导致了赫氏暮眼蝶基因组大小的增加。使用Helixer进行的基因注释鉴定出26122个转录本。通过同线性分析以及对两只重新测序的赫氏暮眼蝶雄性和雌性个体覆盖度的变化,确定了Z染色体支架。赫氏暮眼蝶的核基因组和线粒体基因组组装序列可在BIPAA网站上找到并浏览,为未来的种群和比较基因组学研究提供了有用的资源。