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Automeris io(鳞翅目:天蚕蛾科)的长读基因组组装,一个新兴的展示性威慑进化模型。

Long read genome assembly of Automeris io (Lepidoptera: Saturniidae) an emerging model for the evolution of deimatic displays.

机构信息

McGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL 32611, USA.

Department of Biology, University of Florida, 220 Bartram Hall, Gainesville, FL 32611, USA.

出版信息

G3 (Bethesda). 2024 Mar 6;14(3). doi: 10.1093/g3journal/jkad292.

Abstract

Automeris moths are a morphologically diverse group with 135 described species that have a geographic range that spans from the New World temperate zone to the Neotropics. Many Automeris have elaborate hindwing eyespots that are thought to deter or disrupt the attack of potential predators, allowing the moth time to escape. The Io moth (Automeris io), known for its striking eyespots, is a well-studied species within the genus and is an emerging model system to study the evolution of deimatism. Existing research on the eyespot pattern development will be augmented by genomic resources that allow experimental manipulation of this emerging model. Here, we present a high-quality, PacBio HiFi genome assembly for Io moth to aid existing research on the molecular development of eyespots and future research on other deimatic traits. This 490 Mb assembly is highly contiguous (N50 = 15.78 mbs) and complete (benchmarking universal single-copy orthologs = 98.4%). Additionally, we were able to recover orthologs of genes previously identified as being involved in wing pattern formation and movement.

摘要

美洲夜蛾是一个形态多样的群体,有 135 个已描述的物种,地理分布范围从新大陆温带地区到新热带地区。许多美洲夜蛾的后翅都有精心设计的眼斑,这些眼斑被认为可以阻止或扰乱潜在捕食者的攻击,从而使飞蛾有时间逃脱。Io 夜蛾(Automeris io)因其醒目的眼斑而闻名,是该属中研究得很好的一个物种,也是研究去美化进化的新兴模式系统。现有的眼斑模式发育研究将通过基因组资源得到补充,这些资源可以对这个新兴的模式进行实验操作。在这里,我们为 Io 夜蛾提供了一个高质量的 PacBio HiFi 基因组组装,以帮助现有的眼斑分子发育研究和未来对其他去美化特征的研究。这个 490Mb 的组装具有高度的连续性(N50 = 15.78 mbs)和完整性(基准通用单拷贝直系同源物 = 98.4%)。此外,我们还能够恢复以前确定参与翅膀图案形成和运动的基因的直系同源物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da4a/10917498/0713c6610b0a/jkad292f1.jpg

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