Yu Chen, Yu Meishun, Ma Ruijie, Wei Shuzhen, Jin Min, Jiao Nianzhi, Zheng Qiang, Zhang Rui, Feng Xuejin
State Key Laboratory of Marine Environmental Science, College of Ocean and Earth Sciences, Xiamen University, Xiamen, China.
Archaeal Biology Center, Synthetic Biology Research Center, Shenzhen Key Laboratory of Marine Microbiome Engineering, Key Laboratory of Marine Microbiome Engineering of Guangdong Higher Education Institutes, Institute for Advanced Study, Shenzhen University, Shenzhen, China.
Microbiol Spectr. 2025 Jan 7;13(1):e0093424. doi: 10.1128/spectrum.00934-24. Epub 2024 Nov 20.
Viruses play a vital role in regulating microbial communities, contributing to biogeochemical cycles of carbon, nitrogen, and essential metals. s is widespread and plays an essential role in marine microbial ecology. However, there is limited knowledge about the interactions of and its viruses (alterophages). This study isolated a novel podovirus, vB_AmeP-R22Y (R22Y), which infects marina SW-47 (T). Phylogenetic analysis suggested that R22Y represented a novel viral genus within the family. R22Y exhibited a broad host range and a relatively large burst size, exerting an important impact on the adaptability and dynamics of host populations. Two auxiliary metabolic genes, encoding Acyl carrier protein and AAA domain-containing protein, were predicted in R22Y, which may potentially assist in host fatty acid metabolism and VB12 biosynthesis, respectively. Remarkably, the prediction of the R22Y tail fiber structure revealed six conserved histidine residues (HxH motifs) that could potentially bind iron ions, suggesting that alterophages may function as organic iron-binding ligands in the marine environment. Our isolation and characterization of R22Y complements the Trojan Horse hypothesis, proposes the possible role of alterophages for marine iron biogeochemical cycling, and provides new insights into phage-host interactions in the iron-limited ocean.IMPORTANCEIron (Fe), as an essential micronutrient, is often a limiting factor for microbial growth in marine ecosystems. The Trojan Horse hypothesis suggests that iron in the phage tail fibers is recognized by the host's siderophore-bound iron receptor, enabling the phage to attach and initiate infection. The potential role of phages as iron-binding ligands has significant implications for oceanic trace metal biogeochemistry. In this study, we isolated a new phage R22Y with the potential to bind iron ions, using , a major siderophore producer, as the host. The tail fiber structure of R22Y exhibits six conserved HxH motifs, suggesting that each phage could potentially bind up to 36 iron ions. R22Y may contribute to colloidal organically complexed dissolved iron in the marine environment. This finding provides further insights into the Trojan Horse hypothesis, suggesting that alterophages may act as natural iron-binding ligands in the marine environment.
病毒在调节微生物群落中发挥着至关重要的作用,促进了碳、氮和必需金属的生物地球化学循环。噬藻体分布广泛,在海洋微生物生态学中起着重要作用。然而,关于噬藻体及其病毒(噬藻体病毒)之间的相互作用,我们了解有限。本研究分离出一种新型的短尾病毒,vB_AmeP-R22Y(R22Y),它可感染海洋噬藻体SW-47(T)。系统发育分析表明,R22Y代表噬藻体病毒科内的一个新病毒属。R22Y表现出广泛的宿主范围和相对较大的爆发量,对宿主种群的适应性和动态变化产生重要影响。在R22Y中预测到两个辅助代谢基因,分别编码酰基载体蛋白和含AAA结构域的蛋白,它们可能分别协助宿主进行脂肪酸代谢和维生素B12生物合成。值得注意的是,对R22Y尾纤维结构的预测揭示了六个保守的组氨酸残基(HxH基序),这些残基可能潜在地结合铁离子,这表明噬藻体病毒在海洋环境中可能作为有机铁结合配体发挥作用。我们对R22Y的分离和表征补充了“特洛伊木马”假说,提出了噬藻体病毒在海洋铁生物地球化学循环中的可能作用,并为铁限制海洋中的噬菌体-宿主相互作用提供了新的见解。重要性铁(Fe)作为一种必需的微量营养素,常常是海洋生态系统中微生物生长的限制因素。“特洛伊木马”假说表明,噬菌体尾纤维中的铁被宿主的铁载体结合铁受体识别,使噬菌体能够附着并引发感染。噬菌体作为铁结合配体的潜在作用对海洋微量金属生物地球化学具有重要意义。在本研究中,我们以主要铁载体生产者海洋噬藻体为宿主,分离出一种具有结合铁离子潜力的新噬菌体R22Y。R22Y的尾纤维结构展示出六个保守的HxH基序,这表明每个噬菌体可能潜在地结合多达36个铁离子。R22Y可能有助于海洋环境中胶体有机络合溶解铁的形成。这一发现为“特洛伊木马”假说提供了进一步的见解,表明噬藻体病毒在海洋环境中可能作为天然铁结合配体发挥作用。