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L1-ORF1p核蛋白能够迅速呈现不同的构象,并同时结合不止一种核酸。

L1-ORF1p nucleoprotein can rapidly assume distinct conformations and simultaneously bind more than one nucleic acid.

作者信息

Cashen Ben A, Naufer M Nabuan, Morse Michael, McCauley Micah J, Rouzina Ioulia, Jones Charles E, Furano Anthony V, Williams Mark C

机构信息

Northeastern University, Department of Physics, 360 Huntington Avenue, Boston, MA 02115, USA.

Ohio State University, Department of Chemistry and Biochemistry, Center for Retroviral Research and Center for RNA Biology, 281 W Lane Avenue, Columbus, OH 43210, USA.

出版信息

Nucleic Acids Res. 2024 Dec 11;52(22):14013-14029. doi: 10.1093/nar/gkae1141.

Abstract

LINE-1 (L1) is a parasitic retrotransposable DNA element, active in primates for the last 80-120 Myr. L1 has generated nearly one-third of the human genome by copying its transcripts, and those of other genetic elements (e.g. Alu and SVA), into genomic DNA by target site-primed reverse transcription (TPRT) and remains active in modern humans. L1 encodes two proteins that bind their encoding transcript (cis preference) to form an L1 ribonucleoprotein (RNP) that mediates retrotransposition. ORF2p provides reverse transcriptase and endonuclease activity. ORF1p, its major component, is a homo-trimeric phospho-protein that binds single-stranded nucleic acid (ssNA) with high affinity and exhibits nucleic acid (NA) chaperone activity. We used optical tweezers to examine ORF1p binding to individual single-stranded DNA (ssDNA) molecules and found that the arrangement of ORF1p on the ssDNA depends on their molar ratio. When the concentration of ORF1p is just sufficient to saturate the entire NA molecule, the nucleoprotein (NP) is compact and stable. However, additional ORF1p binds and destabilizes the compacted NP, allowing it to engage a second ssDNA. Our results suggest that ORF1p displaced from its RNA template during TPRT could bind and destabilize remaining downstream L1 RNP, making them susceptible to hijacking by non-L1 templates, and thereby enable retrotransposition of non-L1 transcripts.

摘要

LINE-1(L1)是一种寄生性逆转录转座DNA元件,在过去8000万至1.2亿年里在灵长类动物中具有活性。L1通过将其转录本以及其他遗传元件(如Alu和SVA)的转录本,通过靶位点引发的逆转录(TPRT)复制到基因组DNA中,从而产生了近三分之一的人类基因组,并且在现代人类中仍然具有活性。L1编码两种蛋白质,它们与其编码转录本结合(顺式偏好)形成L1核糖核蛋白(RNP),介导逆转录转座。ORF2p提供逆转录酶和内切核酸酶活性。其主要成分ORF1p是一种同源三聚体磷蛋白,它以高亲和力结合单链核酸(ssNA)并表现出核酸(NA)伴侣活性。我们使用光镊来检测ORF1p与单个单链DNA(ssDNA)分子的结合,发现ORF1p在ssDNA上的排列取决于它们的摩尔比。当ORF1p的浓度刚好足以饱和整个NA分子时,核蛋白(NP)紧密且稳定。然而,额外的ORF1p会结合并破坏紧密的NP的稳定性,使其能够与第二条ssDNA结合。我们的结果表明,在TPRT过程中从其RNA模板上 displaced的ORF1p可以结合并破坏剩余的下游L1 RNP的稳定性,使它们易于被非L1模板劫持,从而实现非L1转录本的逆转录转座。 (注:原文中“displaced”一词在提供的中文翻译内容中未完整翻译准确,推测可能是“解离”之意,但按照要求未做修改。)

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d3c1/11662928/fdfa50100b34/gkae1141figgra1.jpg

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