Muñoz-Hernández Hugo, Xu Yixin, Zhang Daniel, Xue Allen, Aher Amol, Camardiel Aitor Pellicer, Walker Ellie, Marxer Florina, Kapoor Tarun M, Wieczorek Michal
Institute of Molecular Biology and Biophysics, ETH Zürich, Zürich, Switzerland.
These authors contributed equally.
bioRxiv. 2024 Nov 5:2024.11.05.622067. doi: 10.1101/2024.11.05.622067.
The γ-tubulin ring complex (γ-TuRC) is an essential multiprotein assembly, in which γ-tubulin, GCP2-6, actin, MZT1 and MZT2 form an asymmetric cone-shaped structure that provides a template for microtubule nucleation. The γ-TuRC is recruited to microtubule organizing centers (MTOCs), such as centrosomes and pre-existing mitotic spindle microtubules, via the evolutionarily-conserved attachment factor NEDD1. NEDD1 contains an N-terminal WD40 domain that binds to microtubules, and a C-terminal domain that associates with the γ-TuRC. However, the structural basis of the NEDD1-γ-TuRC interaction is not known. Here, we report cryo-electron microscopy (cryo-EM) structures of NEDD1 bound to the human γ-TuRC in the absence or presence of the activating factor CDK5RAP2, which interacts with GCP2 to induce conformational changes in the γ-TuRC and promote its microtubule nucleating function. We found that the C-terminus of NEDD1 forms a tetrameric α-helical assembly that contacts the lumen of the γ-TuRC cone, is anchored to GCP4, 5 and 6 via protein modules consisting of MZT1 & GCP3 subcomplexes, and orients its microtubule-binding WD40 domains away from the complex. We biochemically tested our structural models by identifying NEDD1 mutants unable to pull-down -tubulin from cultured cells. The structure of the γ-TuRC simultaneously bound to NEDD1 and CDK5RAP2 reveals that both factors can associate with the "open" conformation of the complex. Our results show that NEDD1 does not induce conformational changes in the γ-TuRC, but suggest that anchoring of γ-TuRC-capped microtubules by NEDD1 would be structurally compatible with the significant conformational changes experienced by the γ-TuRC during microtubule nucleation.
γ-微管蛋白环复合物(γ-TuRC)是一种重要的多蛋白组装体,其中γ-微管蛋白、GCP2-6、肌动蛋白、MZT1和MZT2形成一种不对称的锥形结构,为微管成核提供模板。γ-TuRC通过进化保守的附着因子NEDD1被招募到微管组织中心(MTOC),如中心体和已有的有丝分裂纺锤体微管。NEDD1包含一个与微管结合的N端WD40结构域和一个与γ-TuRC相关的C端结构域。然而,NEDD1与γ-TuRC相互作用的结构基础尚不清楚。在这里,我们报告了在不存在或存在激活因子CDK5RAP2的情况下,NEDD1与人γ-TuRC结合的冷冻电镜(cryo-EM)结构,CDK5RAP2与GCP2相互作用以诱导γ-TuRC的构象变化并促进其微管成核功能。我们发现NEDD1的C端形成一个四聚体α-螺旋组装体,它与γ-TuRC锥体的内腔接触,通过由MZT1和GCP3亚复合物组成的蛋白质模块锚定到GCP4、5和6,并使其微管结合WD40结构域远离复合物。我们通过鉴定无法从培养细胞中下拉γ-微管蛋白的NEDD1突变体,对我们的结构模型进行了生化测试。γ-TuRC与NEDD1和CDK5RAP2同时结合的结构表明,这两个因子都可以与复合物的“开放”构象相关联。我们的结果表明,NEDD1不会诱导γ-TuRC的构象变化,但表明NEDD1对γ-TuRC封端的微管的锚定在结构上与γ-TuRC在微管成核过程中经历的显著构象变化相容。