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从商业黄瓜发酵中分离出的与发酵和腐败相关的乳酸菌的全基因组序列。 （注：原文“and a isolated”表述有误，推测可能是“and an isolated”，但按正确内容翻译后句子仍稍显不通顺，可能原文表述存在问题）

Whole-genome sequences of fermentative and spoilage-associated lactic acid bacteria, and a isolated from commercial cucumber fermentations.

作者信息

Page Clinton A, Simpson Sheron, D'Souza Carol B M, Pérez-Díaz Ilenys M, Rivers Adam R

机构信息

USDA-Agricultural Research Service, Food Science and Market Quality and Handling Research Unit, Raleigh, North Carolina, USA.

USDA-Agricultural Research Service, Genomics and Bioinformatics Research Unit, Stoneville, Mississippi, USA.

出版信息

Microbiol Resour Announc. 2024 Dec 12;13(12):e0091024. doi: 10.1128/mra.00910-24. Epub 2024 Nov 22.

DOI:10.1128/mra.00910-24
PMID:39576126
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11640280/
Abstract

We report the annotated, whole-genome sequences of 16 bacteria isolated from commercial cucumber fermentations. The collection consists of nine fermentative and two spoilage-associated lactic acid bacteria, four strains, and a . Half the genome assemblies have fewer than 10 contigs, and the remainder have fewer than 30.

摘要

我们报告了从商业黄瓜发酵中分离出的16种细菌的注释全基因组序列。该集合包括9种发酵型和2种与腐败相关的乳酸菌、4种菌株以及1种……。一半的基因组组装片段少于10个重叠群，其余的少于30个。

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本文引用的文献

1
Annotated whole-genome sequences of fermentative and spoilage associated Bacilli and proteobacteria autochthonous to commercial cucumber fermentation.与商业黄瓜发酵相关的发酵型和腐败相关芽孢杆菌及变形菌的全基因组注释序列，这些菌株是黄瓜发酵过程中的本地微生物。
Microbiol Resour Announc. 2024 Mar 12;13(3):e0092623. doi: 10.1128/mra.00926-23. Epub 2024 Feb 1.
2
CO-mediated bloater defect can be induced by the uncontrolled growth of in cucumber fermentation.在黄瓜发酵过程中，一氧化碳介导的膨胀缺陷可能是由[此处原文缺失相关物质]的不受控制的生长引起的。
Food Sci Nutr. 2023 Jul 19;11(10):6178-6187. doi: 10.1002/fsn3.3557. eCollection 2023 Oct.
3
Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR.推出细菌和病毒生物信息学资源中心（BV-BRC）：一个整合 PATRIC、IRD 和 ViPR 的资源。
Nucleic Acids Res. 2023 Jan 6;51(D1):D678-D689. doi: 10.1093/nar/gkac1003.
4
Whole-Genome Sequencing and Annotation of Selected Isolated from Commercial Cucumber Fermentation.从商业黄瓜发酵中分离出的特定菌株的全基因组测序与注释
Microbiol Resour Announc. 2021 Oct 28;10(43):e0062521. doi: 10.1128/MRA.00625-21.
5
Twelve years of SAMtools and BCFtools.SAMtools 和 BCFtools 十二年。
Gigascience. 2021 Feb 16;10(2). doi: 10.1093/gigascience/giab008.
6
metaFlye: scalable long-read metagenome assembly using repeat graphs.metaFlye：使用重复图进行可扩展的长读长宏基因组组装。
Nat Methods. 2020 Nov;17(11):1103-1110. doi: 10.1038/s41592-020-00971-x. Epub 2020 Oct 5.
7
Assessment of the non-lactic acid bacteria microbiota in fresh cucumbers and commercially fermented cucumber pickles brined with 6% NaCl.评估新鲜黄瓜和用 6% 氯化钠腌制的商业发酵黄瓜泡菜中的非乳酸菌微生物组。
Food Microbiol. 2019 Feb;77:10-20. doi: 10.1016/j.fm.2018.08.003. Epub 2018 Aug 7.
8
Reassessment of the succession of lactic acid bacteria in commercial cucumber fermentations and physiological and genomic features associated with their dominance.对商业黄瓜发酵中乳酸菌演替及其优势相关生理和基因组特征的重新评估。
Food Microbiol. 2017 May;63:217-227. doi: 10.1016/j.fm.2016.11.025. Epub 2016 Dec 1.
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