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异化硝酸盐还原的稳定同位素特征不受酶突变的影响。

Stable isotopic signature of dissimilatory nitrate reduction is robust against enzyme mutation.

机构信息

Department of Geological Sciences, University of Colorado Boulder, Boulder, CO 80309.

Department of Geosciences, Princeton University, Princeton, NJ 08544.

出版信息

Proc Natl Acad Sci U S A. 2024 Nov 26;121(48):e2416002121. doi: 10.1073/pnas.2416002121. Epub 2024 Nov 22.

Abstract

The proportionality of oxygen-to-nitrogen isotope effects (ε/ε) is used as a key isotopic signature of nitrogen cycling processes in the environment. Dissimilatory nitrate reduction is observed to have an ε/ε proportionality of ~0.9 in marine and ~0.6 in freshwater/terrestrial ecosystems. The origins of this difference are uncertain, with both geochemical and biological factors conceivably at play. One potential factor is variation in the isotope effect of nitrate reduction among different forms of the nitrate reductase enzyme. NarG nitrate reductases are observed to typically have an ε/ε of ~0.9. However, a recent study uncovered an exception, with NarG enzymes having an ε/ε proportionality of ~0.6. This provides an opportunity to investigate genetic controls on ε/ε. Furthermore, this atypical NarG signature also raises the question of whether intrinsic isotope signatures can evolve as the enzymes that produce them accumulate mutations through time. Here, we present data from site-directed mutagenesis experiments of key NarG residues, which suggest that the distinct ε/ε cannot be caused by single mutations alone and is potentially uncommon in nature. Variation in the intrinsic isotope effects of an enzyme through time may thus require more extensive evolutionary changes.

摘要

氧氮同位素效应比值(ε/ε)的比例被用作环境中氮循环过程的关键同位素特征。在海洋中观察到异化硝酸盐还原的 ε/ε 比例约为 0.9,而在淡水/陆地生态系统中约为 0.6。这种差异的起源尚不确定,可能涉及地球化学和生物学因素。一个潜在的因素是硝酸盐还原酶的不同形式的硝酸盐还原的同位素效应的变化。NarG 硝酸盐还原酶的 ε/ε 通常约为 0.9。然而,最近的一项研究发现了一个例外,NarG 酶的 ε/ε 比例约为 0.6。这为研究 ε/ε 的遗传控制提供了机会。此外,这种非典型的 NarG 特征也提出了一个问题,即随着产生它们的酶随着时间的推移积累突变,内在的同位素特征是否可以进化。在这里,我们提供了关键 NarG 残基的定点诱变实验数据,这表明独特的 ε/ε 不能仅由单个突变引起,并且在自然界中可能不常见。因此,随着时间的推移,酶的固有同位素效应的变化可能需要更广泛的进化变化。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/774b/11621745/e6af7b138b19/pnas.2416002121fig01.jpg

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