Yılmaz Elif, Gastineau Romain, Solak Cüneyt Nadir, Górecka Ewa, Trobajo Rosa, Turmel Monique, Lemieux Claude, Otis Christian, Witkowski Andrzej, Mann David G
Institute of Marine and Environmental Sciences, University of Szczecin, Mickiewicza 16A, PL70-383 Poland.
Department of Biology, Faculty of Science & Art, Dumlupınar University, 43000 Kütahya, Turkiye.
PhytoKeys. 2024 Nov 15;249:95-114. doi: 10.3897/phytokeys.249.133205. eCollection 2024.
In this study, we describe , a newly identified diatom species found in the highly alkaline Lake Van in Eastern Turkey (Türkiye). This new species is characterized morphologically by light and scanning electron microscopy, performed on both wild and cultivated samples. Two monoclonal cultures were submitted to a genome-skimming approach, giving access to the complete sequence of their nuclear rRNA cluster of genes, mitochondrial and plastid genomes. Both strains were highly similar from the genomic point of view, with few mutations noted, although in organellar genomes some of them concerned protein coding genes and were non-silent. Also, the group II intron in the mitochondrial gene was found to display a relatively high number of polymorphisms. The plastome also distinguishes itself from other spp. by the extension of its inverted repeat at the expense of the two single copy regions of the genome. Maximum likelihood molecular phylogeny inferred from a concatenated three genes dataset , and ) positions this species within the K clade, which is known to contain hypersaline to freshwater species.
在本研究中,我们描述了一种新发现的硅藻物种,它发现于土耳其东部( Türkiye )高碱性的凡湖。通过对野生和培养样本进行光学显微镜和扫描电子显微镜观察,从形态学上对这个新物种进行了表征。对两个单克隆培养物采用了基因组浅层测序方法,从而获得了它们核 rRNA 基因簇、线粒体和质体基因组的完整序列。从基因组角度来看,这两个菌株高度相似,仅有少数突变被发现,不过在细胞器基因组中,其中一些突变涉及蛋白质编码基因且并非沉默突变。此外,发现线粒体基因中的 II 类内含子表现出相对较高数量的多态性。该质体基因组也因其反向重复序列的延伸以牺牲基因组的两个单拷贝区域为代价,而与其他物种有所区别。从一个由三个基因( 、 和 )串联而成的数据集中推断出的最大似然分子系统发育,将该物种置于 K 进化枝内,已知该进化枝包含从高盐度到淡水的物种。