Ghimire Nisha, Kim Byeollee, Han So-Ra, Oh Tae-Jin
Department of Life Science and Biochemical Engineering, Graduate School, SunMoon University, Asan, 31460, Republic of Korea.
Bio Big Data-based Chungnam Smart Clean Research Leader Training Program, SunMoon University, Asan, 31460, Republic of Korea.
Heliyon. 2024 Nov 8;10(22):e40280. doi: 10.1016/j.heliyon.2024.e40280. eCollection 2024 Nov 30.
Xenobiotics pose a substantial threat to environmental integrity by disrupting normal ecosystems. The genus , known for its metabolic versatility can degrade several xenobiotic compounds. strains have also undergone frequent taxonomic revisions and reclassifications to strains including and . Here, we present the complete genome sequence of strain NG4, isolated from a coastal area surrounded by chemical plants. Further, through comparative genomics involving 55 strains from , , and , we elucidated taxonomic relationships and xenobiotic degradation potential. Our genomics-based findings revealed a generally even distribution of xenobiotic-degrading genes and pathways among the studied strains. species emerged as potential candidate for steroid degradation. A significant number of host-specific and environmental isolates predominantly possessed pathways for 4-hydroxybenzoate (4-HB) degradation and only the environmental isolates possessed benzoate degradation pathway. Certain and species isolated from the environmental settings were identified as potential degraders of toluene, xylene, and phenanthrene. Notably, most strains contained pathways for azathioprine, capecitabine, and 5-fluorouridine pharmaceutical drug metabolism. Overall, our findings shed light on microbial metabolic diversity among 55 strains isolated from diverse sources and hint the importance of strict environmental monitoring. Further, for the application of the putative xenobiotic degrading strains, experimental validation is required in the future.
外源性物质通过破坏正常生态系统对环境完整性构成重大威胁。以其代谢多样性而闻名的[具体属名]属能够降解多种外源性化合物。[具体属名]菌株也经历了频繁的分类学修订和重新分类,被归为包括[具体菌株名1]和[具体菌株名2]在内的菌株。在此,我们展示了从化工厂环绕的沿海地区分离出的[具体属名]菌株NG4的完整基因组序列。此外,通过对来自[具体属名1]、[具体属名2]和[具体属名3]的55株菌株进行比较基因组学研究,我们阐明了分类学关系和外源性物质降解潜力。我们基于基因组学的研究结果表明,在所研究的菌株中,外源性物质降解基因和途径普遍分布均匀。[具体物种名]成为类固醇降解的潜在候选者。大量宿主特异性和环境分离株主要拥有4 - 羟基苯甲酸(4 - HB)降解途径,只有环境分离株拥有苯甲酸降解途径。从环境中分离出的某些[具体属名1]和[具体属名2]物种被确定为甲苯、二甲苯和菲的潜在降解者。值得注意的是,大多数菌株含有硫唑嘌呤、卡培他滨和5 - 氟尿苷药物代谢途径。总体而言,我们的研究结果揭示了从不同来源分离出的55株菌株之间的微生物代谢多样性,并暗示了严格环境监测的重要性。此外,对于推定的外源性物质降解菌株的应用,未来需要进行实验验证。