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α/β-D-吡喃木糖在热解条件下的构象分析

conformational analysis of α/β-D-xylopyranose at pyrolysis conditions.

作者信息

Ballotta Bernardo, Lupi Jacopo, Ayarde-Henríquez Leandro, Dooley Stephen

机构信息

School of Physics, Trinity College Dublin, Dublin 2, Ireland.

AMBER, Advance Materials and BioEngineering Research Centre, Dublin 2, Ireland.

出版信息

Phys Chem Chem Phys. 2024 Dec 4;26(47):29661-29673. doi: 10.1039/d4cp03719g.

DOI:10.1039/d4cp03719g
PMID:39589771
Abstract

Xylopyranose is the principal monosaccharide unit of hemicellulose, one of the three major biopolymers of lignocellulosic biomass. Understanding its decomposition mechanism is increasingly relevant for thermochemical biorefinery research such as pyrolysis. Significant efforts have been made to study its chemical and structural properties using both computational and experimental methods. However, due to its high structural flexibility and numerous hydroxyl groups, various metastable conformers arise. In this work, we performed a computational exploration of the conformational space of both anomeric forms, α and β, of D-xylopyranose using the semi-empirical GFN2-xTB method in conjunction with metadynamics and density functional theory simulations for structural optimization and vibrational analysis. Xylopyranose conformers free energy and enthalpy variations are analyzed across temperatures typical of fast biomass pyrolysis (298-1068 K), with the Boltzmann population distribution of the most populated conformers determined. This study provides a detailed computational analysis of the conformational space and thermochemistry of xylopyranose. Additionally, 44 and 59 conformers of the α and β anomers were found, for both of which a selection of 10 conformers based on Boltzmann population distribution analysis is performed to reduce the conformational space for studies of the pyrolysis reaction kinetics.

摘要

木糖吡喃糖是半纤维素的主要单糖单元,半纤维素是木质纤维素生物质的三大主要生物聚合物之一。了解其分解机制对于热化学生物炼制研究(如热解)越来越重要。人们已经使用计算和实验方法对其化学和结构性质进行了大量研究。然而,由于其高度的结构灵活性和众多的羟基,会出现各种亚稳构象体。在这项工作中,我们使用半经验GFN2-xTB方法结合元动力学以及用于结构优化和振动分析的密度泛函理论模拟,对D-木糖吡喃糖的α和β两种异头物形式的构象空间进行了计算探索。分析了木糖吡喃糖构象体在快速生物质热解典型温度(298 - 1068 K)范围内的自由能和焓变,并确定了最丰富构象体的玻尔兹曼布居分布。本研究提供了对木糖吡喃糖构象空间和热化学的详细计算分析。此外,还发现了α和β异头物的44个和59个构象体,基于玻尔兹曼布居分布分析,对这两种异头物都选择了10个构象体,以减少用于热解反应动力学研究的构象空间。

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引用本文的文献

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Xylopyranose Ring-Opening by Single and Double Proton Transfers Under Pyrolysis Conditions.热解条件下单质子和双质子转移引发的吡喃木糖开环反应
J Comput Chem. 2025 Jun 15;46(16):e70151. doi: 10.1002/jcc.70151.
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Evans-Polanyi-like Formulations for Rapidly Predicting Key Depolymerization Barriers in Xylopyranoses: Toward the Faster Development of Kinetic Models for Hemicellulose Pyrolysis.用于快速预测木吡喃糖中关键解聚势垒的类埃文斯-波拉尼公式:迈向半纤维素热解动力学模型的更快发展
J Phys Chem A. 2025 May 29;129(21):4767-4785. doi: 10.1021/acs.jpca.5c00675. Epub 2025 May 14.