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基于密度泛函理论计算、分子对接和实验验证的新型、快速且环保的羧甲基纤维素-氮掺杂碳点生物传感器

Novel, Speedy, and Eco-Friendly Carboxymethyl Cellulose-Nitrogen Doped Carbon Dots Biosensors with DFT Calculations, Molecular Docking, and Experimental Validation.

作者信息

Tohamy Hebat-Allah S

机构信息

Cellulose & Paper Department, National Research Centre, 33 El-Bohouth St., Dokki, Giza P.O. Box 12622, Egypt.

出版信息

Gels. 2024 Oct 24;10(11):686. doi: 10.3390/gels10110686.

DOI:10.3390/gels10110686
PMID:39590042
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11593792/
Abstract

Carboxymethyl cellulose (CMC) was prepared from sugarcane bagasse (SB) in minutes using a novel microwave method. Additionally, nitrogen-doped carbon dots (N-CDs) were synthesized from SB using the same microwave technique. These materials were crosslinked with CaCl to prepare antibacterial/antifungal hydrogel sensors. In this regard, both CMC@Ca and CMC@Ca-N-CDs exhibited antibacterial activity against (Gram negative), while only CMC@Ca-N-CDs demonstrated antibacterial activity against (Gram positive). Moreover, both materials showed antifungal activity against . The molecular docking study demonstrated that CMC@Ca-N-CDs showed good binding with proteins with short bond length 2.59, 2.80, and 1.97 A° for , , and , respectively. These binding affinities were corroborated by the observed inhibition zone diameters. Furthermore, fluorescence microscope revealed distinct imaging patterns between Gram-positive and Gram-negative bacteria, as well as pathogenic yeast (fungi). CMC@Ca-N-CDs emitted blue light when exposed to and (i.e., CMC@Ca-N-CDs/ and ), whereas it emitted bright-red light when exposed to (i.e., CMC@Ca-N-CDs/). This disparity in the fluorescence-emitted colors is due to the difference in the cell wall of these microorganisms. Additionally, DFT calculations were conducted to substantiate the robust chemical interactions between CMC, Ca, and N-CDs.

摘要

采用一种新型微波方法,在数分钟内由甘蔗渣(SB)制备了羧甲基纤维素(CMC)。此外,使用相同的微波技术由SB合成了氮掺杂碳点(N-CDs)。这些材料与氯化钙交联以制备抗菌/抗真菌水凝胶传感器。在这方面,CMC@Ca和CMC@Ca-N-CDs对革兰氏阴性菌均表现出抗菌活性,而只有CMC@Ca-N-CDs对革兰氏阳性菌表现出抗菌活性。此外,两种材料对均表现出抗真菌活性。分子对接研究表明,CMC@Ca-N-CDs与蛋白质具有良好的结合,对于、和,其短键长度分别为2.59、2.80和1.97埃。这些结合亲和力通过观察到的抑菌圈直径得到了证实。此外,荧光显微镜揭示了革兰氏阳性菌和革兰氏阴性菌以及致病性酵母(真菌)之间不同的成像模式。当暴露于和(即CMC@Ca-N-CDs/和)时,CMC@Ca-N-CDs发出蓝光;而当暴露于(即CMC@Ca-N-CDs/)时,它发出亮红色光。这种荧光发射颜色的差异是由于这些微生物细胞壁的差异。此外,进行了密度泛函理论(DFT)计算,以证实CMC、Ca和N-CDs之间强大的化学相互作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a8ba/11593792/a7a1dc777e89/gels-10-00686-g007.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a8ba/11593792/a7a1dc777e89/gels-10-00686-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a8ba/11593792/5db9807cfc5e/gels-10-00686-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a8ba/11593792/f61cb3ec4ccd/gels-10-00686-g002a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a8ba/11593792/808429990227/gels-10-00686-g003a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a8ba/11593792/c1bea74e0404/gels-10-00686-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a8ba/11593792/50ab167b6656/gels-10-00686-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a8ba/11593792/0a1be093cf54/gels-10-00686-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a8ba/11593792/a7a1dc777e89/gels-10-00686-g007.jpg

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