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基于GEO数据集、网络药理学、实验验证和分子对接探讨益气温阳护肺汤治疗哮喘的作用机制

Mechanisms Underlying the Therapeutic Effects of Yiqi Wenyang Huwei Decoction in Treating Asthma Based on GEO Datasets, Network Pharmacology, Experimental Validation, and Molecular Docking.

作者信息

Xiang Shuangdi, Lu Yujiao, Cheng Linhui, Xue Hanrong

机构信息

Clinical Medical College, Jiangxi University of Chinese Medicine, Nanchang, 330000, China.

Changyang No. 1 Senior High School, Yichang, 443000, China.

出版信息

Comb Chem High Throughput Screen. 2024 Nov 28. doi: 10.2174/0113862073293081240606111739.

DOI:10.2174/0113862073293081240606111739
PMID:39610125
Abstract

PURPOSE

The Yiqi Wenyang Huwei Decoction (YWHD) is an herbal formula frequently utilized to treat asthma. Despite its wide usage, the specific mechanism of action remains unknown. Through an in-depth investigation utilizing network pharmacology, molecular docking techniques, and experimental validation, this study aims to uncover the molecular mechanism and material basis of YWHD in the treatment of asthma.

METHODS

The compounds and targets of YWHD were gathered from various databases such as TCMSP, PubMed, and CNKI. Additionally, asthma-related targets were obtained by combining the GEO dataset with GeneCards and OMIM databases. The STRING platform was employed to establish protein-protein interactions. GO and KEGG pathway enrichment analyses were conducted using DAVID. Molecular docking was utilized to assess the binding affinity between potential targets and active compounds. The asthma rat model was established through OVA induction, and a lung function meter was used to detect Mch-induced Max Rrs. HE staining was conducted to observe pathological changes, while ELISA was used to detect levels of inflammatory factors IL4, IL6, IL13, and IgE in BLAF. Furthermore, qPCR was used to detect levels of IL-1β, IL-6, JUN, and PTGS2 mRNA, while Western blot assay was employed to measure phosphorylation levels of NF-κB and IKKα.

RESULTS

A comprehensive study revealed that YWHD has 188 active compounds and 250 corresponding targets. After conducting a topological analysis of the PPI network, the study identified 14 high-activity targets, including JUN, PTGS2, IL6, IL1B, CXCL8, MMP9, IL10, ALB, TGFB1, CCL2, IFNG, IL4, MAPK3, and STAT3. Further, GO and KEGG pathway enrichment analysis indicated that YWHD targets inflammation-related genes and regulates IL- 17 and NF-kappa B signaling pathways. Animal studies have shown that YWHD can effectively minimize airway Max Rrs, reduce the levels of inflammatory factors IL4, IL13, IL6, and IgE in BLAF, and improve airway inflammation in rats with asthma. Molecular experiments have also demonstrated that YWHD achieves this by down-regulating the expression levels of IL-1β, IL-6, JUN, and PTGS2 mRNA, inhibiting the phosphorylation modification levels of NF-κB and IKKα, and reducing the levels of inflammatory cytokines IL4, IL13, IL6, and IgE in BALF of rats. Interestingly, molecular docking has revealed that the active compounds in YWHD have a strong binding ability to the screening targets.

CONCLUSION

This research endeavor systematically explicated the active constituents, prospective targets, and signaling pathways of YWHD for asthmatic intervention. The study provides an innovative notion and dependable resource for comprehending the molecular mechanism and pharmaceutical screening of YWHD in the context of asthma treatment.

摘要

目的

益气温阳护肺汤(YWHD)是一种常用于治疗哮喘的中药方剂。尽管其应用广泛,但其具体作用机制尚不清楚。本研究通过网络药理学、分子对接技术和实验验证等深入研究,旨在揭示YWHD治疗哮喘的分子机制和物质基础。

方法

从中药系统药理学数据库与分析平台(TCMSP)、PubMed和中国知网等多个数据库收集YWHD的化合物和靶点。此外,通过将基因表达综合数据库(GEO)数据集与基因卡片(GeneCards)和在线孟德尔遗传性人类疾病数据库(OMIM)相结合,获取哮喘相关靶点。利用STRING平台建立蛋白质-蛋白质相互作用。使用DAVID进行基因本体论(GO)和京都基因与基因组百科全书(KEGG)通路富集分析。利用分子对接评估潜在靶点与活性化合物之间的结合亲和力。通过卵清蛋白(OVA)诱导建立哮喘大鼠模型,使用肺功能仪检测乙酰甲胆碱(Mch)诱导的最大呼气阻力(Max Rrs)。进行苏木精-伊红(HE)染色观察病理变化,同时使用酶联免疫吸附测定(ELISA)检测支气管肺泡灌洗液(BLAF)中炎症因子白细胞介素4(IL4)、白细胞介素6(IL6)、白细胞介素13(IL13)和免疫球蛋白E(IgE)的水平。此外,使用实时定量聚合酶链反应(qPCR)检测白细胞介素-1β(IL-1β)、白细胞介素6、原癌基因蛋白(JUN)和环氧合酶-2(PTGS2)mRNA的水平,同时采用蛋白质免疫印迹法检测核因子κB(NF-κB)和抑制核因子κB激酶α(IKKα)的磷酸化水平。

结果

一项综合研究表明,YWHD有188种活性化合物和250个相应靶点。对蛋白质-蛋白质相互作用网络进行拓扑分析后,该研究确定了14个高活性靶点,包括JUN、PTGS2、IL6、白细胞介素1β(IL1B)、趋化因子(CXCL8)、基质金属蛋白酶9(MMP9)、白细胞介素10(IL10)、白蛋白(ALB)、转化生长因子β1(TGFB1)、趋化因子配体2(CCL2)、干扰素γ(IFNG)、IL4、丝裂原活化蛋白激酶3(MAPK3)和信号转导与转录激活因子3(STAT3)。此外,GO和KEGG通路富集分析表明,YWHD靶向炎症相关基因并调节白细胞介素17和NF-κB信号通路。动物研究表明,YWHD可有效降低气道Max Rrs,降低BLAF中炎症因子IL4、IL13、IL6和IgE水平,并改善哮喘大鼠的气道炎症。分子实验还表明,YWHD通过下调IL-1β、IL6、JUN和PTGS2 mRNA的表达水平,抑制NF-κB和IKKα的磷酸化修饰水平,并降低大鼠BALF中炎症细胞因子IL4、IL13、IL6和IgE的水平来实现这一点。有趣的是,分子对接显示YWHD中的活性化合物与筛选出的靶点具有很强的结合能力。

结论

本研究系统地阐明了YWHD干预哮喘的活性成分、潜在靶点和信号通路。该研究为理解YWHD在哮喘治疗中的分子机制和药物筛选提供了创新思路和可靠资源。

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