Schuder Daniel N, Lu Nhi D, Chaput John C
Department of Molecular Biology and Biochemistry, University of California, Irvine, California 92697-3958, United States.
Department of Pharmaceutical Sciences, University of California, Irvine, California 92697-3958, United States.
ACS Synth Biol. 2024 Dec 20;13(12):4202-4208. doi: 10.1021/acssynbio.4c00644. Epub 2024 Dec 4.
RNA-encoded viral nucleic acid analyte reporter (REVEALR) is a rapid and highly sensitive point-of-care diagnostic developed for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) detection, genotyping, and quantification. Here, we extend the breadth of this nucleic acid technology to include a viral respiratory panel that can detect low attomolar levels of influenza A (IAV), influenza B (IBV), SARS-CoV-2 (CoV2), and the respiratory syncytial virus (RSV). Of 39 clinical samples collected at the UCI Medical Center in Orange, California, the extended REVEALR panel showed a positive predictive agreement and negative predictive agreement of 100% for IAV, CoV2, and RSV in sequence-verified clinical samples, with 0 false positive results. Additionally, REVEALR was able to detect a synthetic IBV genome and precisely identify the viruses from clinical samples that were combined to simulate a patient infected with more than one virus. Together, these results demonstrate that the REVEALR respiratory panel provides a valuable diagnostic for identifying the pathogens responsible for causing lower respiratory infections that pose serious healthcare challenges in the United States.
RNA编码病毒核酸分析物报告器(REVEALR)是一种快速且高度灵敏的即时诊断方法,用于检测、基因分型和定量严重急性呼吸综合征冠状病毒2(SARS-CoV-2)。在此,我们将这种核酸技术的应用范围扩展到包括一个病毒呼吸道检测组,该检测组能够检测低至阿托摩尔水平的甲型流感病毒(IAV)、乙型流感病毒(IBV)、SARS-CoV-2(CoV2)和呼吸道合胞病毒(RSV)。在加利福尼亚州奥兰治的加州大学欧文分校医学中心收集的39份临床样本中,扩展后的REVEALR检测组在经序列验证的临床样本中对IAV、CoV2和RSV的阳性预测一致性和阴性预测一致性均为100%,且无假阳性结果。此外,REVEALR能够检测合成的IBV基因组,并准确识别来自临床样本中的病毒,这些样本被混合以模拟感染了多种病毒的患者。总之,这些结果表明,REVEALR呼吸道检测组为识别导致下呼吸道感染的病原体提供了一种有价值的诊断方法,而下呼吸道感染在美国构成了严重的医疗挑战。