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西西伯利亚族群中已知的种系LGR4错义变异的频率。

The frequency of known germline LGR4 missense variant in the ethnic groups of West Siberia.

作者信息

Gervas Polina, Molokov Aleksey, Babyshkina Nataliya, Zherebnova Anna, Choynzonov Evgeny, Cherdyntseva Nadezda

机构信息

Cancer Research Institute, Tomsk National Research Medical Center of the Russian Academy of Science, Tomsk, Russia.

National Tomsk State University, Tomsk, Russia.

出版信息

Mol Biol Rep. 2024 Dec 7;52(1):42. doi: 10.1007/s11033-024-10133-3.

DOI:10.1007/s11033-024-10133-3
PMID:39644398
Abstract

BACKGROUND

Hereditary breast cancer is an autosomal dominant disease caused by variants in genes such as BRCA1/2, RAD51, ATM, BRIP1, and others. In a previous study using whole exome sequencing, we identified a germline variant of the LGR4 gene (rs34804482, NM_018490.5(LGR4):c.2531 A > G (p.Asp844Gly)) in a young Tuvan breast cancer patient (belonging to the Turkic-speaking tribes of Central Asia). The aim of this study was to determine the frequency of the variant of the LGR4 gene NM_018490.5(LGR4):c.2531 A > G (p.Asp844Gly) in ethnic groups of West Siberia using the PCR-RT method.

METHODS

The study involved 735 breast cancer patients from ethnic groups in Siberia, median age at diagnosis of 43 ± 15.6 years. The control group consisted of 727 healthy women from Siberia, median age of 43.05 ± 13.5 years.

RESULTS

The frequency of this variant (rs34804482) was 0.015 in Russian, 0.022 in Buryat, and 0.069 in Tuvan breast cancer patients. In Tuvan women with breast cancer, the frequency of the LGR4 gene variant was significantly higher than in Russian BC patients (0.069 versus 0.015, X = 8.153, p = 0.005). The frequency of the LGR4 gene variant (rs34804482) in healthy Tuvan women was significantly higher than in healthy Russian women (0.066 versus 0.016, X = 6.368, p = 0.012). The variant frequency in healthy Russians was close to that in Europeans (0.016 versus 0.0219).

CONCLUSIONS

We found no statistically significant differences in the rs34804482 frequency between breast cancer patients and healthy individuals in the ethnic groups studied. The highest frequency of this missense germline variant was observed among Tuvans.

摘要

背景

遗传性乳腺癌是一种常染色体显性疾病,由BRCA1/2、RAD51、ATM、BRIP1等基因的变异引起。在之前一项使用全外显子测序的研究中,我们在一名年轻的图瓦族乳腺癌患者(属于中亚说突厥语的部落)中鉴定出LGR4基因的一个种系变异(rs34804482,NM_018490.5(LGR4):c.2531 A>G (p.Asp844Gly))。本研究的目的是使用PCR-RT方法确定西西伯利亚不同种族群体中LGR4基因变异NM_018490.5(LGR4):c.2531 A>G (p.Asp844Gly)的频率。

方法

该研究纳入了735名来自西伯利亚不同种族的乳腺癌患者,诊断时的中位年龄为43±15.6岁。对照组由727名来自西伯利亚的健康女性组成,中位年龄为43.05±13.5岁。

结果

该变异(rs34804482)在俄罗斯族乳腺癌患者中的频率为0.015,在布里亚特族中为0.022,在图瓦族乳腺癌患者中为0.069。在图瓦族乳腺癌女性中,LGR4基因变异的频率显著高于俄罗斯族乳腺癌患者(0.069对0.015,X=8.153,p=0.005)。健康图瓦族女性中LGR4基因变异(rs34804482)的频率显著高于健康俄罗斯族女性(0.066对0.016,X=6.368,p=0.012)。健康俄罗斯族中的变异频率与欧洲人相近(0.016对0.0219)。

结论

在研究的种族群体中,我们发现乳腺癌患者和健康个体之间rs34804482频率没有统计学上的显著差异。这种错义种系变异在图瓦族中出现的频率最高。

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本文引用的文献

1
Exome Sequencing: the Search for Mutations Associated with Hereditary Breast and Ovarian Cancers in the Tuvan Ethnic Group (A Pilot Study).外显子组测序:在图瓦族群中寻找与遗传性乳腺癌和卵巢癌相关的突变(一项初步研究)。
Bull Exp Biol Med. 2024 Apr;176(6):801-805. doi: 10.1007/s10517-024-06112-0. Epub 2024 Jun 19.
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Implementing Whole Genome Sequencing (WGS) in Clinical Practice: Advantages, Challenges, and Future Perspectives.在临床实践中实施全基因组测序(WGS):优势、挑战和未来展望。
Cells. 2024 Mar 13;13(6):504. doi: 10.3390/cells13060504.
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A genomic mutational constraint map using variation in 76,156 human genomes.
基于 76156 个人类基因组的变异,绘制出基因组突变约束图谱。
Nature. 2024 Jan;625(7993):92-100. doi: 10.1038/s41586-023-06045-0. Epub 2023 Dec 6.
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Emerging Roles for LGR4 in Organ Development, Energy Metabolism and Carcinogenesis.LGR4在器官发育、能量代谢和癌症发生中的新作用
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