Cash Elizabeth I, Ward Philip S, Escalona Merly, Sahasrabudhe Ruta, Miller Courtney, Toffelmier Erin, Fairbairn Colin, Seligmann William, Shaffer H Bradley, Tsutsui Neil D
Department of Environmental Science, Policy, and Management, University of California-Berkeley, Berkeley, CA, United States.
Department of Environmental Engineering Sciences, University of Florida, Gainesville, FL, United States.
J Hered. 2025 Jun 2;116(3):354-362. doi: 10.1093/jhered/esae066.
The winter ant, Prenolepis imparis, is one of the most common, widespread, and conspicuous ant species in North America. P. imparis is well adapted to cold climates, and consequently, is often noted as the only active ant species during colder months. This specialized life history makes P. imparis a useful model organism for exploring thermal physiology and understanding the potential impacts of a warming climate on insects. Phylogeographic studies have revealed deeply divergent lineages across North America, as well as a single collection of an apparent social parasite in California. In light of its distinctive cold adaptation and recently discovered geographic diversity, a better understanding of the underlying genetic patterns of the winter ant is valuable to future conservation efforts for this species. Here, we present a high-quality genome assembly of P. imparis from Santa Clara County, California. This genome assembly consists of 787 scaffolds spanning 327.3 Mb, with contig N50 of 901.9 kb, scaffold N50 of 18.7 Mb, and BUSCO completeness of 96.5%. This genome assembly provides an essential foundation for future studies of the winter ant and will be particularly useful for understanding the genetic basis of thermal adaptation, cold resistance, chemical ecology, and the resilience of organisms in response to a changing climate.
冬蚁(Prenolepis imparis)是北美最常见、分布最广且最为引人注目的蚁种之一。冬蚁非常适应寒冷气候,因此常被视为寒冷月份里唯一活跃的蚁种。这种特殊的生活史使冬蚁成为探索热生理学以及理解气候变暖对昆虫潜在影响的有用模式生物。系统地理学研究揭示了北美各地存在深度分化的谱系,以及在加利福尼亚发现的一个明显的社会性寄生蚁种群。鉴于其独特的寒冷适应性和最近发现的地理多样性,更好地了解冬蚁的潜在遗传模式对该物种未来的保护工作具有重要价值。在此,我们展示了来自加利福尼亚州圣克拉拉县的冬蚁高质量基因组组装。该基因组组装由787个支架组成,跨度为327.3 Mb,重叠群N50为901.9 kb,支架N50为18.7 Mb,BUSCO完整性为96.5%。这个基因组组装为冬蚁未来的研究提供了重要基础,对于理解热适应、抗寒能力、化学生态学以及生物体应对气候变化的恢复力的遗传基础将特别有用。