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一种与失巢凋亡相关的基因特征可预测急性髓系白血病患者的预后及免疫治疗效果。

An anoikis-related gene signature predicts prognosis in patients with acute myeloid leukemia and immunotherapy.

作者信息

Xu Rong, Du Ashuai, Li Jianbo, Yang Qinglong

机构信息

Department of Pathology, Changde Hospital, Xiangya School of Medicine, Central South University (The First People's Hospital of Changde City) Changde 415000, Hunan, China.

Department of Infectious Diseases, Guizhou Provincial People's Hospital Guiyang 550002, Guizhou, China.

出版信息

Am J Cancer Res. 2024 Nov 15;14(11):5116-5132. doi: 10.62347/MJTA2660. eCollection 2024.

DOI:10.62347/MJTA2660
PMID:39659934
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11626272/
Abstract

Acute myeloid leukemia (AML) is a malignant blood disorder and the most common type of acute leukemia in adults. Notwithstanding the plethora of therapeutic modalities, a significant cohort of patients fail to respond to treatment and experience relapse. Anoikis, a distinct modality of programmed cell death, has been linked to cancer progression. However, the prognostic significance of anoikis in AML remains unclear. In this study, a non-negative matrix factorization algorithm was utilized to efficiently reduce the dimensions of merged datasets. We used differential analysis, weighted gene co-expression network analysis (WGCNA), univariate Cox regression, and least absolute shrinkage and selection operator (LASSO) regression to identify genes associated with prognosis and develop a risk scoring model. Immunohistochemistry was conducted to assess the expression levels of key genes in clinical samples. The association between risk score and the tumor microenvironment (TME), stemness, clinical characteristics, and immunotherapy was evaluated. We identified 41 AML anoikis-related genes (ANRGs) related to survival, and seven genes were chosen to develop prognostic models. The prognostic risk score combined with the clinical and pathological features of AML was used to develop a nomogram, and decision curve analysis demonstrated the net clinical benefit of the model. Furthermore, analysis of ANRGs revealed that PDGFRB inhibition significantly reduced the proliferation of AML cells, promoted apoptosis, and inhibited AML progression both in vitro and in vivo, indicating that PDGFRB plays a crucial role in AML development.

摘要

急性髓系白血病(AML)是一种恶性血液疾病,也是成人中最常见的急性白血病类型。尽管有大量的治疗方式,但仍有相当一部分患者对治疗无反应并经历复发。失巢凋亡是一种独特的程序性细胞死亡方式,与癌症进展有关。然而,失巢凋亡在AML中的预后意义仍不清楚。在本研究中,我们利用非负矩阵分解算法有效地降低了合并数据集的维度。我们使用差异分析、加权基因共表达网络分析(WGCNA)、单变量Cox回归和最小绝对收缩和选择算子(LASSO)回归来识别与预后相关的基因并建立风险评分模型。通过免疫组织化学评估临床样本中关键基因的表达水平。评估了风险评分与肿瘤微环境(TME)、干性、临床特征和免疫治疗之间的关联。我们鉴定出41个与AML失巢凋亡相关的生存基因(ANRGs),并选择了7个基因来建立预后模型。将预后风险评分与AML的临床和病理特征相结合,绘制了列线图,决策曲线分析证明了该模型的净临床获益。此外,对ANRGs的分析表明,抑制血小板衍生生长因子受体B(PDGFRB)可显著降低AML细胞的增殖,促进细胞凋亡,并在体外和体内抑制AML进展,这表明PDGFRB在AML发展中起关键作用。

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本文引用的文献

1
Cuproptosis-related lncRNAs as potential biomarkers of AML prognosis and the role of lncRNA HAGLR/miR-326/CDKN2A regulatory axis in AML.铜死亡相关lncRNAs作为急性髓系白血病预后的潜在生物标志物以及lncRNA HAGLR/miR-326/CDKN2A调控轴在急性髓系白血病中的作用
Am J Cancer Res. 2023 Sep 15;13(9):3921-3940. eCollection 2023.
2
Exosomal circRNA-001264 promotes AML immunosuppression through induction of M2-like macrophages and PD-L1 overexpression.外泌体 circRNA-001264 通过诱导 M2 样巨噬细胞和 PD-L1 过表达促进 AML 的免疫抑制。
Int Immunopharmacol. 2023 Nov;124(Pt A):110868. doi: 10.1016/j.intimp.2023.110868. Epub 2023 Aug 30.
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Establishment and validation of a novel anoikis-related prognostic signature of clear cell renal cell carcinoma.建立并验证一种新型的与细胞黏附丧失相关的肾透明细胞癌预后标志物。
Front Immunol. 2023 Mar 28;14:1171883. doi: 10.3389/fimmu.2023.1171883. eCollection 2023.
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Blebs promote cell survival by assembling oncogenic signalling hubs.小泡通过组装致癌信号枢纽促进细胞存活。
Nature. 2023 Mar;615(7952):517-525. doi: 10.1038/s41586-023-05758-6. Epub 2023 Mar 1.
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Identification and validation of an anoikis-associated gene signature to predict clinical character, stemness, IDH mutation, and immune filtration in glioblastoma.鉴定和验证与失巢凋亡相关的基因特征,以预测胶质母细胞瘤的临床特征、干性、IDH 突变和免疫滤过。
Front Immunol. 2022 Aug 25;13:939523. doi: 10.3389/fimmu.2022.939523. eCollection 2022.
6
The Tumor Immune Microenvironment in Pancreatic Ductal Adenocarcinoma: Neither Hot nor Cold.胰腺导管腺癌中的肿瘤免疫微环境:非热亦非冷
Cancers (Basel). 2022 Aug 31;14(17):4236. doi: 10.3390/cancers14174236.
7
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Establishment of a prognostic ferroptosis-related gene profile in acute myeloid leukaemia.建立急性髓系白血病预后相关的铁死亡基因特征。
J Cell Mol Med. 2021 Dec;25(23):10950-10960. doi: 10.1111/jcmm.17013. Epub 2021 Nov 5.
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