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小分子有机化合物反应扩散网络中的化学波

Chemical waves in reaction-diffusion networks of small organic molecules.

作者信息

Paikar Arpita, Li Xiuxiu, Avram Liat, Smith Barbara S, Sütő István, Horváth Dezső, Rennert Elisabeth, Qiu Yuqing, Tóth Ágota, Vaikuntanathan Suriyanarayanan, Semenov Sergey N

机构信息

Department of Molecular Chemistry and Materials Science, Weizmann Institute of Science Rehovot Israel

Department of Chemistry, Shenzhen Key Laboratory of Small Molecule Drug Discovery and Synthesis, Southern University of Science and Technology Shenzhen China.

出版信息

Chem Sci. 2024 Dec 9;16(2):659-669. doi: 10.1039/d4sc06351a. eCollection 2025 Jan 2.

Abstract

Chemical waves represent one of the fundamental behaviors that emerge in nonlinear, out-of-equilibrium chemical systems. They also play a central role in regulating behaviors and development of biological organisms. Nevertheless, understanding their properties and achieving their rational synthesis remains challenging. In this work, we obtained traveling chemical waves using synthetic organic molecules. To accomplish this, we ran a thiol-based reaction network in an unstirred flow reactor. Our observations revealed single or multiple waves moving in either the same or opposite directions, a behavior controlled by the geometry of our reactor. A numerical model can fully reproduce this behavior using the proposed reaction network. To better understand the formation of waves, we varied the diffusion coefficient of the fast inhibitor component of the reaction network by attaching polyethylene glycol tails with different lengths to maleimide and studied how these changes affect the properties of the waves and conditions for their sustained production. These studies point towards the importance of the molecular titration network motif in controlling the production of chemical waves in this system. Furthermore, we used machine learning (ML) tools to identify phase boundaries for classes of dynamic behaviors of this system, thus demonstrating the applicability of ML tools for the study of experimental nonlinear reaction-diffusion systems.

摘要

化学波是出现在非线性、非平衡化学系统中的基本行为之一。它们在调节生物有机体的行为和发育中也起着核心作用。然而,了解它们的性质并实现其合理合成仍然具有挑战性。在这项工作中,我们使用合成有机分子获得了行波化学波。为了实现这一点,我们在一个未搅拌的流动反应器中运行了一个基于硫醇的反应网络。我们的观察结果显示,单个或多个波沿相同或相反方向移动,这种行为由我们反应器的几何形状控制。一个数值模型可以使用所提出的反应网络完全重现这种行为。为了更好地理解波的形成,我们通过将不同长度的聚乙二醇链连接到马来酰亚胺上,改变了反应网络中快速抑制剂成分的扩散系数,并研究了这些变化如何影响波的性质及其持续产生的条件。这些研究表明分子滴定网络基序在控制该系统中化学波产生方面的重要性。此外,我们使用机器学习(ML)工具来识别该系统动态行为类别的相边界,从而证明了ML工具在研究实验性非线性反应扩散系统中的适用性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7c21/11773998/c57c26f0e6e5/d4sc06351a-f1.jpg

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