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基于神经-癌症串扰相关基因的胰腺导管腺癌预后模型的建立与分析

Establishment and analysis of a prognostic model of pancreatic ductal adenocarcinomas based on nerve-cancer crosstalk-related genes.

作者信息

Jiang Lei, Lu Xiaozhi, Dai Yuran, Jiang Kuirong, Miao Yi, Yu Jun, Yin Lingdi, Wei Jishu

机构信息

Pancreas Center, The First Affiliated Hospital of Nanjing Medical University Nanjing, Jiangsu, China.

Pancreas Institute of Nanjing Medical University Nanjing, Jiangsu, China.

出版信息

Int J Clin Exp Pathol. 2024 Nov 15;17(11):396-410. doi: 10.62347/GHUM8504. eCollection 2024.

Abstract

Pancreatic ductal adenocarcinoma (PDAC) is a highly malignant tumor with a five-year survival rate of 13%, the lowest among all malignant tumors. The work aims to use bioinformatics methods to mine Nerve-cancer crosstalk-related genes (NCCGs) in pancreatic cancer and evaluate their correlation with tumor stage and prognosis, thereby providing a new direction of development and experimental basis for pancreatic cancer treatment. This study included 185 individuals with PDAC from the TCGA database, together with clinical and RNA sequencing data. A review of prior studies revealed the mechanism of neural-cancer crosstalk and identified 42 neural-cancer crosstalk-related genes (NCCGs). Multivariate logistic regression analysis showed that NGFR (OR=39.076, 95% CI; P<0.05), CHRNB2 (OR=41.076, 95% CI; P<0.05), and CHRNA10 (OR=39.038, 95% CI; P<0.05) were identified as independent risk factors for PNI development. Pearson correlation analysis revealed that CHRNA10 was negatively connected with PDAC microsatellite instability, whereas CHRNA10, CHRNB2, and NGFR were negatively correlated with PDAC tumor mutation burden. The GEPIA database revealed that CHRNB2 expression was higher in stage I PDAC. The pancreatic cancer single-cell dataset PAAD_CRA001160 revealed that malignant tumor cells, ductal cells, endothelial cells and fibroblasts accounted for a large proportion in the tumor microenvironment of pancreatic cancer. Furthermore, the NGFR gene was shown to be more significantly expressed in various pancreatic cancer cells. Bioinformatics analysis was used to create a validated prognostic model of pancreatic cancer, which explored the critical mechanisms of neural-tumor interactions and revealed the potential of cancer-neural crosstalk-related genes as prognostic biomarkers and anti-tumor therapy targets.

摘要

胰腺导管腺癌(PDAC)是一种高度恶性的肿瘤,五年生存率为13%,在所有恶性肿瘤中是最低的。这项工作旨在使用生物信息学方法挖掘胰腺癌中神经-癌症相互作用相关基因(NCCGs),并评估它们与肿瘤分期和预后的相关性,从而为胰腺癌治疗提供新的发展方向和实验依据。本研究纳入了来自TCGA数据库的185例PDAC患者,以及临床和RNA测序数据。对先前研究的回顾揭示了神经-癌症相互作用的机制,并确定了42个神经-癌症相互作用相关基因(NCCGs)。多因素逻辑回归分析表明,NGFR(OR=39.076,95%CI;P<0.05)、CHRNB2(OR=41.076,95%CI;P<0.05)和CHRNA10(OR=39.038,95%CI;P<0.05)被确定为PNI发生的独立危险因素。Pearson相关性分析显示,CHRNA10与PDAC微卫星不稳定性呈负相关,而CHRNA10、CHRNB2和NGFR与PDAC肿瘤突变负荷呈负相关。GEPIA数据库显示,CHRNB2在I期PDAC中的表达较高。胰腺癌单细胞数据集PAAD_CRA001160显示,恶性肿瘤细胞、导管细胞、内皮细胞和成纤维细胞在胰腺癌的肿瘤微环境中占很大比例。此外,NGFR基因在各种胰腺癌细胞中表达更显著。生物信息学分析用于创建一个经过验证的胰腺癌预后模型,该模型探索了神经-肿瘤相互作用的关键机制,并揭示了癌症-神经相互作用相关基因作为预后生物标志物和抗肿瘤治疗靶点的潜力。

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