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Establishment and bioinformatics analysis of a four-miRNA prognostic signature for pleural mesothelioma.

作者信息

Yang Xi, Lin Yaru, Dong Baoru, Li Bin, Liu Ruai, Wang Xinmeng, Li Jinsong, Cheng Xue, Li Zhengliang, Xiong Wei

机构信息

Department of Biochemistry and Molecular Biology, College of Basic Medical Sciences, Dali University, Dali 671000, Yunnan, China.

Yunnan Provincial Key Laboratory of Entomological Biopharmaceutical R&D, College of Pharmacy, Dali University, Dali 671000, Yunnan, China.

出版信息

J Cancer. 2024 Oct 21;15(20):6505-6520. doi: 10.7150/jca.101914. eCollection 2024.


DOI:10.7150/jca.101914
PMID:39668817
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11632982/
Abstract

Pleural mesothelioma (PM), an uncommon yet highly aggressive malignant neoplasm, has a very poor prognosis with a median survival of less than one year after diagnosis, morbidity and mortality due to PM are on the rise year by year worldwide. Our research aims to utilize molecular characteristics and microRNAs (miRNAs) as a breakthrough in predicting the survival of PM patients, hoping to find a molecular mechanism that can predict the survival of PM patients. The miRNA expression profiles and corresponding clinical information of patients with PM were obtained from The Cancer Genome Atlas (TCGA) database, a miRNA-based prognostic signature was developed using Cox regression analysis in the training cohort, which was validated in the testing cohort and complete cohort. The association between miRNA levels and survival outcomes was determined, the miRNAs in prognostic model were experimentally validated by quantitative real-time PCR (qRT-PCR) in cell lines. Target genes of prognostic miRNAs were identified using TargetScan, miRDB, and miRTarBase databases, biological function prediction of which was accomplished by GO and KEGG analysis. Gene Expression Omnibus (GEO) database was utilized for core targets recognition, immune infiltration and survival analysis were conducted to investigate the relationship between core targets and immune cells by bioinformatics analysis. This miRNA-related prognostic risk model can effectively stratify patients into high-risk and low-risk groups, and have good sensitivity and specificity to assess the prognosis of patients with PM, which can also be used as an independent prognostic factor for overall survival (OS) prediction in patients with PM, the OS for patients in high-risk group was significantly poorer compared with patients in low-risk group. Moreover, all four miRNAs (hsa-miR-181a-2-3p, hsa-miR-491-5P, hsa-miR-503-5p, and hsa-miR-3934-5p) were found to be differentially expressed in PM cell lines as compared with normal cell line, GO and KEGG analysis revealed that target genes of miRNAs in prognostic model were involved in multiple tumor-associated signaling pathways and functions in PM, core miRNA targets also correlated with immune cell infiltration, indicating their potential role in PM initiation and progression. A robust four-miRNA prognostic signature with great performances in prediction of the OS for PM patients was developed in our study, providing new avenues for the prognostic predication of PM.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad0b/11632982/9f3b1a322a7e/jcav15p6505g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad0b/11632982/2b0cdf401922/jcav15p6505g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad0b/11632982/57c1d6c520db/jcav15p6505g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad0b/11632982/71ff5899ebe5/jcav15p6505g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad0b/11632982/f7099347680a/jcav15p6505g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad0b/11632982/bd2958478c69/jcav15p6505g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad0b/11632982/d3c55c246576/jcav15p6505g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad0b/11632982/5c653736bbd6/jcav15p6505g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad0b/11632982/b762f298d6e4/jcav15p6505g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad0b/11632982/93a566587109/jcav15p6505g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad0b/11632982/9f3b1a322a7e/jcav15p6505g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad0b/11632982/2b0cdf401922/jcav15p6505g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad0b/11632982/57c1d6c520db/jcav15p6505g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad0b/11632982/71ff5899ebe5/jcav15p6505g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad0b/11632982/f7099347680a/jcav15p6505g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad0b/11632982/bd2958478c69/jcav15p6505g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad0b/11632982/d3c55c246576/jcav15p6505g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad0b/11632982/5c653736bbd6/jcav15p6505g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad0b/11632982/b762f298d6e4/jcav15p6505g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad0b/11632982/93a566587109/jcav15p6505g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad0b/11632982/9f3b1a322a7e/jcav15p6505g010.jpg

相似文献

[1]
Establishment and bioinformatics analysis of a four-miRNA prognostic signature for pleural mesothelioma.

J Cancer. 2024-10-21

[2]
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[3]
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[4]
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[5]
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[6]
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[7]
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[8]
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[9]
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[10]
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本文引用的文献

[1]
Characterization of a miRNA Signature with Enhanced Diagnostic and Prognostic Power for Patients with Bladder Carcinoma.

Int J Mol Sci. 2023-11-13

[2]
Incidence and mortality from malignant mesothelioma 1982-2020 and relationship with asbestos exposure: the Australian Mesothelioma Registry.

Occup Environ Med. 2023-4

[3]
Identification of a four-miRNA signature predicts the prognosis of papillary thyroid cancer.

World J Clin Cases. 2023-1-6

[4]
Development of a 7-miRNA prognostic signature for patients with bladder cancer.

Aging (Albany NY). 2022-12-21

[5]
Targeting Oncogenic miR-181a-2-3p Inhibits Growth and Suppresses Cisplatin Resistance of Gastric Cancer.

Cancer Manag Res. 2021-11-16

[6]
miR-181a-2-3p Stimulates Gastric Cancer Progression Targeting MYLK.

Front Bioeng Biotechnol. 2021-10-18

[7]
Retrospective Evaluation of the Use of Pembrolizumab in Malignant Mesothelioma in a Real-World Australian Population.

JTO Clin Res Rep. 2020-7-16

[8]
Epidemiology and Clinical Aspects of Malignant Pleural Mesothelioma.

Cancers (Basel). 2021-8-20

[9]
Plasma extracellular vesicle microRNA-491-5p as diagnostic and prognostic marker for head and neck squamous cell carcinoma.

Cancer Sci. 2021-10

[10]
Natural Killer Cells: The Linchpin for Successful Cancer Immunotherapy.

Front Immunol. 2021

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