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利用荧光带型分析以及45S和5S rDNA荧光原位杂交技术对忽地笑居群进行核型比较分析

Comparative Karyotype Analysis of Lycoris aurea Herb Populations Using Fluorochrome Banding and 45S and 5S rDNA-FISH.

作者信息

Jiang Xianghui, Quan Miaohua, She Chaowen

机构信息

Key Laboratory of Research and Utilization of Ethnomedicinal Plant Resources of Hunan Province, Huaihua University;

Key Laboratory of Research and Utilization of Ethnomedicinal Plant Resources of Hunan Province, Huaihua University.

出版信息

J Vis Exp. 2024 Nov 29(213). doi: 10.3791/67363.

DOI:10.3791/67363
PMID:39671333
Abstract

To understand karyotype variation in eight populations, detailed karyotypes were meticulously established using chromosomal measurements, fluorescence bands, and rDNA FISH signals. The number of 45S rDNA sites varies from one to five pairs per population, with the most common number per karyotype being four pairs. The 45S rDNA locus is predominantly located in the short arms and terminal regions of chromosomes, while the 5S rDNA locus is found mainly in the short arm and the terminal or proximal regions. Populations HBWF, HNXN, HBBD, and HNZX showed a similar distribution of 45S rDNA sites, as did GXTL, HBFC, and SCLS, indicating a close relationship between populations with similar 45S rDNA site distributions. The karyotypes of all studied populations are symmetrical, comprising stable and metastable centromeres or exclusively stable centromeres. Scatter plots of MCA and CVCL effectively distinguish their karyotypic structures. The analysis includes six quantitative parameters (x, 2n, TCL, MCA, CVCL, CVCI). Additionally, the results indicate that PCoA based on these six parameters is a robust method for determining biological karyotype relationships among the eight populations. The chromosome number in Lycoris populations is x = 6-8. Based on the current study and literature, genomic differentiation of these populations is discussed in terms of genome size, heterochromatin, 45S and 5S rDNA sites, and karyotype asymmetry.

摘要

为了解八个种群的核型变异情况,利用染色体测量、荧光带和核糖体DNA荧光原位杂交(rDNA FISH)信号精心构建了详细的核型。每个种群的45S rDNA位点数量从1对到5对不等,每个核型中最常见的数量是4对。45S rDNA位点主要位于染色体的短臂和末端区域,而5S rDNA位点主要位于短臂以及末端或近端区域。种群HBWF、HNXN、HBBD和HNZX的45S rDNA位点分布相似,GXTL、HBFC和SCLS的情况也相似,这表明具有相似45S rDNA位点分布的种群之间关系密切。所有研究种群的核型都是对称的,包括稳定和亚稳定着丝粒或仅稳定着丝粒。平均染色体长度(MCA)和相对臂比(CVCL)的散点图有效地区分了它们的核型结构。分析包括六个定量参数(x、2n、总染色体长度(TCL)、MCA、CVCL、着丝粒指数(CVCI))。此外,结果表明基于这六个参数的主坐标分析(PCoA)是确定这八个种群之间生物学核型关系的一种可靠方法。石蒜属种群的染色体数为x = 6 - 8。基于当前研究和文献,从基因组大小、异染色质、45S和5S rDNA位点以及核型不对称性等方面讨论了这些种群的基因组分化情况。

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