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功能-结构植物模型“GreenLab”:最新综述

Functional-Structural Plant Model "GreenLab": A State-of-the-Art Review.

作者信息

Wang Xiujuan, Hua Jing, Kang Mengzhen, Wang Haoyu, de Reffye Philippe

机构信息

State Key Laboratory of Multimodal Artificial Intelligence Systems, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China.

School of Artificial Intelligence, University of Chinese Academy of Sciences, Beijing 100049, China.

出版信息

Plant Phenomics. 2024 Feb 7;6:0118. doi: 10.34133/plantphenomics.0118. eCollection 2024.

Abstract

It is crucial to assess the impact of climate change on crop productivity and sustainability for the development of effective adaptation measures. Crop models are essential for quantifying this impact on crop yields. To better express crops' intrinsic growth and development patterns and their plasticity under different environmental conditions, the functional-structural plant model (FSPM) "GreenLab" has been developed. GreenLab is an organ-level model that can describe the intrinsic growth and development patterns of plants based on mathematical expressions without considering the influence of environmental factors, and then simulate the growth and development of plants in expressing plant plasticity under different environmental conditions. Moreover, the distinctive feature of GreenLab lies in its ability to compute model source-sink parameters affecting biomass production and allocation based on measured plant data. Over the past two decades, the GreenLab model has undergone continuous development, incorporating novel modeling methods and techniques, including the dual-scale automaton, substructure methods, the inverse of source-sink parameters, crown analysis, organic series, potential structure, and parameter optimization techniques. This paper reviews the development history, the basic concepts, main theories, characteristics, and applications of the GreenLab model. Additionally, we introduce the software tools that implement the GreenLab model. Last, we discuss the perspectives and directions for the GreenLab model's future development.

摘要

评估气候变化对作物生产力和可持续性的影响对于制定有效的适应措施至关重要。作物模型对于量化这种对作物产量的影响至关重要。为了更好地表达作物在不同环境条件下的内在生长发育模式及其可塑性,已开发出功能-结构植物模型(FSPM)“GreenLab”。GreenLab是一个器官水平的模型,它可以基于数学表达式描述植物的内在生长发育模式,而不考虑环境因素的影响,然后在表达植物在不同环境条件下的可塑性时模拟植物的生长发育。此外,GreenLab的独特之处在于它能够根据实测植物数据计算影响生物量生产和分配的模型源汇参数。在过去二十年中,GreenLab模型不断发展,纳入了新颖的建模方法和技术,包括双尺度自动机、子结构方法、源汇参数反演、冠层分析、有机序列、潜在结构和参数优化技术。本文综述了GreenLab模型的发展历程、基本概念、主要理论、特点及应用。此外,我们介绍了实现GreenLab模型的软件工具。最后,我们讨论了GreenLab模型未来发展的前景和方向。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a2a6/11654067/b84735018d03/plantphenomics.0118.fig.001.jpg

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