Yan Hong-Ping, Kang Meng Zhen, de Reffye Philippe, Dingkuhn Michael
NLPR, Institute of automation, CAS, 2728, 100081, Beijing, China.
Ann Bot. 2004 May;93(5):591-602. doi: 10.1093/aob/mch078. Epub 2004 Mar 31.
Physiological and architectural plant models have originally been developed for different purposes and therefore have little in common, thus making combined applications difficult. There is, however, an increasing demand for crop models that simulate the genetic and resource-dependent variability of plant geometry and architecture, because man is increasingly able to transform plant production systems through combined genetic and environmental engineering.
GREENLAB is presented, a mathematical plant model that simulates interactions between plant structure and function. Dual-scale automaton is used to simulate plant organogenesis from germination to maturity on the basis of organogenetic growth cycles that have constant thermal time. Plant fresh biomass production is computed from transpiration, assuming transpiration efficiency to be constant and atmospheric demand to be the driving force, under non-limiting water supply. The fresh biomass is then distributed among expanding organs according to their relative demand. Demand for organ growth is estimated from allometric relationships (e.g. leaf surface to weight ratios) and kinetics of potential growth rate for each organ type. These are obtained through parameter optimization against empirical, morphological data sets by running the model in inverted mode. Potential growth rates are then used as estimates of relative sink strength in the model. These and other 'hidden' plant parameters are calibrated using the non-linear, least-square method.
The model reproduced accurately the dynamics of plant growth, architecture and geometry of various annual and woody plants, enabling 3D visualization. It was also able to simulate the variability of leaf size on the plant and compensatory growth following pruning, as a result of internal competition for resources. The potential of the model's underlying concepts to predict the plant's phenotypic plasticity is discussed.
生理和结构植物模型最初是为不同目的而开发的,因此共同点很少,这使得联合应用变得困难。然而,对模拟植物几何形状和结构的遗传及资源依赖性变异性的作物模型的需求日益增加,因为人类越来越能够通过基因工程和环境工程相结合来改造植物生产系统。
介绍了GREENLAB,这是一个模拟植物结构与功能相互作用的数学模型。双尺度自动机用于根据具有恒定热时间的器官发生生长周期,模拟从发芽到成熟的植物器官发生。在水分供应非限制的情况下,假设蒸腾效率恒定且大气需求为驱动力,根据蒸腾作用计算植物鲜生物量产量。然后,根据各扩展器官的相对需求将鲜生物量分配到这些器官中。器官生长需求根据异速生长关系(如叶面积与重量比)和每种器官类型的潜在生长速率动力学来估计。这些通过以反模式运行模型,针对经验形态数据集进行参数优化来获得。然后将潜在生长速率用作模型中相对库强的估计值。这些以及其他“隐藏”的植物参数使用非线性最小二乘法进行校准。
该模型准确再现了各种一年生和木本植物的生长、结构和几何形状动态,实现了三维可视化。由于资源的内部竞争,它还能够模拟植物叶片大小的变异性以及修剪后的补偿性生长。讨论了该模型基本概念预测植物表型可塑性的潜力。