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马氏魮脂鲤的完整线粒体基因组序列及与贝氏魮脂鲤的比较分析

Complete mitochondrial genome sequence of Nannostomus eques and comparative analysis with Nannostomus beckfordi.

作者信息

Li Xian-Ru, Sun Cheng-He, Zhan Yi-Jing, Jia Shuang-Xi, Lu Chang-Hu

机构信息

Co-Innovation Center for Sustainable Forestry in Southern China, College of Life Sciences, Nanjing Forestry University, Nanjing, 210037, China.

出版信息

Mol Genet Genomics. 2024 Dec 20;300(1):3. doi: 10.1007/s00438-024-02212-8.

Abstract

The brown pencilfish, Nannostomus eques is a lebiasinid harvested for ornamental purposes; however, its complete mitochondrial genome sequence is still unknown. To enrich the molecular genetic information pertaining to Nannostomus, we present here the first report of the complete mitochondrial genome sequence of Nannostomus eques and compare it with Nannostomus beckfordi. The total lengths of the N. eques and N. beckfordi mitochondrial genomes were 16,673 bp and 16,742 bp, respectively, and there was a double-stranded ring with a heavy chain and a light chain in the whole structures of both. We used PhyloSuite v1.2.1 to construct the maximum likelihood and Bayesian Analysis trees based on tRNAs, rRNAs, and protein-coding genes (PCGs) data and compared them with other Nannostomus species by referring to other studies. Our study found that N. beckfordi has a closer genetic relationship with N. eques than with Lebiasina astrigata, which belongs to the same family, and we discovered some similarities and even rules in Nannostomus species. Our study provides a molecular basis for the conservation and sustainable use of Nannostomus species.

摘要

棕色铅笔鱼(Nannostomus eques)是一种因观赏目的而被捕捞的脂鲤科鱼类;然而,其完整的线粒体基因组序列仍然未知。为了丰富与铅笔鱼属相关的分子遗传信息,我们在此首次报告了棕色铅笔鱼完整的线粒体基因组序列,并将其与贝克福德氏铅笔鱼(Nannostomus beckfordi)进行比较。棕色铅笔鱼和贝克福德氏铅笔鱼线粒体基因组的总长度分别为16,673 bp和16,742 bp,两者的整体结构均为具有重链和轻链的双链环。我们使用PhyloSuite v1.2.1基于tRNA、rRNA和蛋白质编码基因(PCG)数据构建最大似然树和贝叶斯分析树,并参考其他研究将它们与其他铅笔鱼属物种进行比较。我们的研究发现,贝克福德氏铅笔鱼与棕色铅笔鱼的遗传关系比与同属一科的星点脂鲤(Lebiasina astrigata)更近,并且我们在铅笔鱼属物种中发现了一些相似之处甚至规律。我们的研究为铅笔鱼属物种的保护和可持续利用提供了分子基础。

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