Rathi Aanchal, Noor Saba, Sulaimani Md Nayab, Ahmed Shahbaz, Taiyab Aaliya, AlAjmi Mohamed F, Khan Faez Iqbal, Hassan Md Imtaiyaz, Haque Mohammad Mahfuzul
Department of Biotechnology, Faculty of Life Sciences, Jamia Millia Islamia, New Delhi 110025, India.
Centre for Interdisciplinary Research in Basic Sciences, Jamia Millia Islamia, New Delhi 110025, India.
Int J Biol Macromol. 2025 Mar;292:139107. doi: 10.1016/j.ijbiomac.2024.139107. Epub 2024 Dec 23.
PIM-1 kinase, a member of the Serine/Threonine kinase family, has emerged as a promising therapeutic target in various cancers due to its role in promoting tumor growth and resistance to conventional therapies. In this study, we employed a structure-based approach to screen 3800 FDA-approved drugs to discover potential inhibitors of PIM-1. After an initial selection of 50 candidates based on high docking scores, four drugs, stanozolol, alfaxalone, rifaximin, and telmisartan, were identified as strong PIM-1 binders, interacting with key residues in the ATP-binding pocket of the kinase. To assess the stability of these interactions, we conducted all-atom molecular dynamic simulations, confirming favorable dynamics. Experimental validation via a kinase inhibition assay on recombinant PIM-1 showed that rifaximin significantly inhibited PIM-1 activity, with an IC of ∼26 μM. Fluorescence binding assays further demonstrated a strong binding affinity for rifaximin, with a binding constant, corroborated by isothermal titration calorimetry studies. Our findings suggest that rifaximin may serve as a potential repurposed drug for targeting PIM-1 in cancer treatment. However, further validations are required in a clinical setting before the final therapeutic implications.
PIM-1激酶是丝氨酸/苏氨酸激酶家族的成员之一,由于其在促进肿瘤生长和对传统疗法的抗性方面所起的作用,已成为各种癌症中一个有前景的治疗靶点。在本研究中,我们采用基于结构的方法筛选了3800种FDA批准的药物,以发现PIM-1的潜在抑制剂。在基于高对接分数初步筛选出50个候选药物后,确定了四种药物,即司坦唑醇、阿法沙龙、利福昔明和替米沙坦为强效PIM-1结合剂,它们与该激酶ATP结合口袋中的关键残基相互作用。为了评估这些相互作用的稳定性,我们进行了全原子分子动力学模拟,证实了有利的动力学。通过对重组PIM-1的激酶抑制试验进行的实验验证表明,利福昔明显著抑制PIM-1活性,IC50约为26 μM。荧光结合试验进一步证明了利福昔明具有很强的结合亲和力,等温滴定量热法研究证实了其结合常数。我们的研究结果表明,利福昔明可能作为一种潜在的重新利用药物,用于癌症治疗中靶向PIM-1。然而,在确定最终的治疗意义之前,还需要在临床环境中进行进一步验证。