Cherezov Roman O, Vorontsova Julia E, Kuvaeva Elena E, Akishina Angelina A, Zavoloka Ekaterina L, Simonova Olga B
Kol'tsov Institute of Developmental Biology, Russian Academy of Sciences, Moscow, 119334, Russia.
Institute of Gene Biology, Russian Academy of Sciences, Moscow, 119334, Russia.
J Genet Genomics. 2025 Jul;52(7):901-914. doi: 10.1016/j.jgg.2024.12.014. Epub 2024 Dec 27.
It has recently become evident that the de novo emergence of genes is widespread and documented for a variety of organisms. De novo genes frequently emerge in proximity to existing genes, forming gene overlaps. Here, we present an analysis of the evolutionary history of a putative de novo gene, lawc, which overlaps with the conserved Trf2 gene, which encodes a general transcription factor in Drosophila melanogaster. We demonstrate that lawc emerged approximately 68 million years ago in the 5'-untranslated region (UTR) of Trf2 and displays an extensive spatiotemporal expression pattern. One of the most remarkable features of the lawc evolutionary history is that its emergence was facilitated by the engagement of Drosophilidae-specific short, highly conserved regions located in Trf2 introns. This represents a unique example of putative de novo gene birth involving conserved DNA regions localized in introns of conserved genes. The observed lawc expression pattern may be due to the overlap of lawc with the 5'-UTR of Trf2. This study not only enriches our understanding of gene evolution but also highlights the complex interplay between genetic conservation and innovation.
最近已经很明显,新基因的从头出现很普遍,并且在多种生物体中都有记录。新基因经常在现有基因附近出现,形成基因重叠。在这里,我们对一个假定的新基因lawc的进化历史进行了分析,它与保守的Trf2基因重叠,Trf2基因在黑腹果蝇中编码一种通用转录因子。我们证明,lawc大约在6800万年前出现在Trf2的5'非翻译区(UTR),并表现出广泛的时空表达模式。lawc进化历史中最显著的特征之一是,它的出现得益于位于Trf2内含子中的果蝇科特有的短而高度保守的区域的参与。这代表了一个假定的新基因诞生的独特例子,涉及位于保守基因内含子中的保守DNA区域。观察到的lawc表达模式可能是由于lawc与Trf2的5'-UTR重叠所致。这项研究不仅丰富了我们对基因进化的理解,也突出了遗传保守与创新之间复杂的相互作用。