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结直肠癌预后基因特征的开发及P4HA1在铜死亡调节中的探索

Development of a prognostic gene signature and exploration of P4HA1 in the modulation of cuproptosis in colorectal cancer.

作者信息

Jiang RenJie, Ruan LinLin, Ding Taohui, Wan Hongtao, Chen Yanglin, Zhu XiaoJian, Huang Zhijiang, Yao Dengke, Li Ming, Yi Bo, Liu Dan

机构信息

2nd Abdominal Surgery Department, Jiangxi Cancer Hospital, The Second Affiliated Hospital of Nanchang Medical College, Nanchang, 330029, Jiangxi, People's Republic of China.

School of Pharmacy, Jiangxi Medical College, Nanchang University, Nanchang, 330006, People's Republic of China.

出版信息

Sci Rep. 2024 Dec 30;14(1):31766. doi: 10.1038/s41598-024-82625-y.


DOI:10.1038/s41598-024-82625-y
PMID:39738206
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11686350/
Abstract

Cuproptosis, a newly identified form of cell death, has drawn increasing attention for its association with various cancers, though its specific role in colorectal cancer (CRC) remains unclear. In this study, transcriptomic and clinical data from CRC patients available in the TCGA database were analyzed to investigate the impact of cuproptosis. Differentially expressed genes linked to cuproptosis were identified using Weighted Gene Co-Expression Network Analysis (WGCNA). Key genes were further refined through LASSO regression and random forest approaches, culminating in the development of a prognostic model comprising six critical genes. The predictive accuracy of the model was validated using two independent external datasets. This model effectively stratified patients into high- and low-risk groups, which exhibited significant differences in disease stage, immune landscape, tumor mutational burden, and therapeutic response, underscoring the robustness of the model. P4HA1 was identified as a key gene of interest, where downregulation was found to inhibit tumor progression in single-cell sequencing analyses and in vitro experiments. Additionally, suppression of P4HA1 enhanced the sensitivity of CRC cells to the cuproptosis inducer elesclomol (ES), potentially through oxidative stress mechanisms. In conclusion, this study proposes a prognostic model based on six cuproptosis-related genes that could aid in personalizing CRC treatment. Furthermore, P4HA1 emerges as a promising therapeutic target.

摘要

铜死亡是一种新发现的细胞死亡形式,因其与多种癌症的关联而受到越来越多的关注,尽管其在结直肠癌(CRC)中的具体作用仍不清楚。在本研究中,分析了TCGA数据库中CRC患者的转录组和临床数据,以研究铜死亡的影响。使用加权基因共表达网络分析(WGCNA)确定了与铜死亡相关的差异表达基因。通过LASSO回归和随机森林方法进一步筛选关键基因,最终建立了一个包含六个关键基因的预后模型。使用两个独立的外部数据集验证了该模型的预测准确性。该模型有效地将患者分为高风险和低风险组,这两组在疾病分期、免疫格局、肿瘤突变负担和治疗反应方面存在显著差异,突出了该模型的稳健性。P4HA1被确定为一个关键的感兴趣基因,在单细胞测序分析和体外实验中发现其下调可抑制肿瘤进展。此外,抑制P4HA1可能通过氧化应激机制增强CRC细胞对铜死亡诱导剂依立替康(ES)的敏感性。总之,本研究提出了一个基于六个与铜死亡相关基因的预后模型,该模型有助于CRC治疗的个性化。此外,P4HA1成为一个有前景的治疗靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84a6/11686350/033f99869002/41598_2024_82625_Fig12_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84a6/11686350/797f73d81a12/41598_2024_82625_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84a6/11686350/3c1122dfb6ec/41598_2024_82625_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84a6/11686350/db3d2822439c/41598_2024_82625_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84a6/11686350/1e2a6413c843/41598_2024_82625_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84a6/11686350/8983b661e92e/41598_2024_82625_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84a6/11686350/2b9cd944e1f0/41598_2024_82625_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84a6/11686350/272d56ad3486/41598_2024_82625_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84a6/11686350/dff0b3dcd291/41598_2024_82625_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84a6/11686350/1a6b8746fa27/41598_2024_82625_Fig9_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84a6/11686350/35cf176da91e/41598_2024_82625_Fig10_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84a6/11686350/f5b6aed520c6/41598_2024_82625_Fig11_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84a6/11686350/033f99869002/41598_2024_82625_Fig12_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84a6/11686350/797f73d81a12/41598_2024_82625_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84a6/11686350/3c1122dfb6ec/41598_2024_82625_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84a6/11686350/db3d2822439c/41598_2024_82625_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84a6/11686350/1e2a6413c843/41598_2024_82625_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84a6/11686350/8983b661e92e/41598_2024_82625_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84a6/11686350/2b9cd944e1f0/41598_2024_82625_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84a6/11686350/272d56ad3486/41598_2024_82625_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84a6/11686350/dff0b3dcd291/41598_2024_82625_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84a6/11686350/1a6b8746fa27/41598_2024_82625_Fig9_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84a6/11686350/35cf176da91e/41598_2024_82625_Fig10_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84a6/11686350/f5b6aed520c6/41598_2024_82625_Fig11_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84a6/11686350/033f99869002/41598_2024_82625_Fig12_HTML.jpg

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[1]
Development of a prognostic gene signature and exploration of P4HA1 in the modulation of cuproptosis in colorectal cancer.

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[2]
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[3]
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引用本文的文献

[1]
Cuproptosis: the mechanisms of copper-induced cell death and its implication in colorectal cancer.

Naunyn Schmiedebergs Arch Pharmacol. 2025-5-21

本文引用的文献

[1]
Development and verification of a combined immune- and cancer-associated fibroblast related prognostic signature for colon adenocarcinoma.

Front Immunol. 2024-1-19

[2]
Cuproptosis: A novel therapeutic target for overcoming cancer drug resistance.

Drug Resist Updat. 2024-1

[3]
The role of CD4 T cells in tumor and chronic viral immune responses.

MedComm (2020). 2023-10-10

[4]
Copper homeostasis and cuproptosis in cardiovascular disease therapeutics.

Trends Pharmacol Sci. 2023-9

[5]
A comprehensive analysis of different types of databases reveals that CDH1 mRNA and E-cadherin protein are not downregulated in most carcinoma tissues and carcinoma cell lines.

BMC Cancer. 2023-5-15

[6]
SPINK4 promotes colorectal cancer cell proliferation and inhibits ferroptosis.

BMC Gastroenterol. 2023-4-3

[7]
Cuproptosis: mechanisms and links with cancers.

Mol Cancer. 2023-3-7

[8]
P4HA1 activates HMGCS1 to promote nasopharyngeal carcinoma ferroptosis resistance and progression.

Cell Signal. 2023-5

[9]
Fibroblast ferroptosis is involved in periodontitis-induced tissue damage and bone loss.

Int Immunopharmacol. 2023-1

[10]
Copper homeostasis and cuproptosis in health and disease.

Signal Transduct Target Ther. 2022-11-23

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