• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

综合转录组分析揭示了硬骨鱼肌腱骨化的进化和发育特征。

Integrated transcriptomic analysis reveals evolutionary and developmental characteristics of tendon ossification in teleost.

作者信息

Wang Xu-Dong, Shi Fei-Long, Zhou Jia-Jia, Xiao Zheng-Yu, Tu Tan, Xiong Xue-Mei, Nie Chun-Hong, Wan Shi-Ming, Gao Ze-Xia

机构信息

College of Fisheries, Hubei Hongshan Laboratory/Key Lab of Freshwater Animal Breeding, Ministry of Agriculture and Rural Affairs/Engineering Research Center of Green Development for Conventional Aquatic Biological Industry in the Yangtze River Economic Belt, Ministry of Education, Huazhong Agricultural University, No. 1 Shizishan Street, Hongshan District, Wuhan, 430070, Hubei, China.

Laboratory for Marine Biology and Biotechnology, Qingdao Marine Science and Technology Center, Qingdao, 266237, China.

出版信息

BMC Biol. 2024 Dec 31;22(1):304. doi: 10.1186/s12915-024-02103-9.

DOI:10.1186/s12915-024-02103-9
PMID:39741296
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11689531/
Abstract

BACKGROUND

Intermuscular bones (IBs) are segmental intramembranous ossifications located within myosepta. They share similarities with tendon ossification, a form of heterotopic ossification (HO). The mechanisms underlying IB formation remain incompletely understood.

RESULTS

In this study, we systematically analyzed transcriptome data across multiple tissues, species, time points, and resolutions in teleosts. First, we identified IB-specific expression genes using the tau index method. Through cross-species comparisons of the tendon development process, we discovered that candidate genes were primarily enriched in extracellular matrix organization, ossification, regulation of angiogenesis, and other related processes. We also revealed that some of these candidate genes are abnormally expressed in runx2b zebrafish, which lack IBs. To clarify the trajectory of cell differentiation during IB formation, we demonstrated that myoseptal stem cells differentiate into osteoblasts, fibroblasts, and tenocytes in runx2b zebrafish. However, in runx2b zebrafish, the differentiation of myoseptal stem cell into osteoblast was inhibited, while differentiation into clec3bb + tenocyte and fibroblast was enhanced. Additionally, runx2b deficiency led to the upregulation of clec3bb expression in the clec3bb + tenocyte cluster. Notably, a compensatory effect was observed in cell differentiation and gene expression in runx2b zebrafish, suggesting that runx2b and the candidate genes, such as clec3bb, were involved in the gene network of IB development.

CONCLUSIONS

The results elucidate cell differentiation process during tendon ossification in teleosts and identify the key factor clec3bb involved in this process. These findings provide a foundation for understanding tendon ossification in teleosts and for further research on tendon ossification in mammals.

摘要

背景

肌间骨(IBs)是位于肌隔内的节段性膜内骨化结构。它们与肌腱骨化(一种异位骨化形式)有相似之处。肌间骨形成的潜在机制仍未完全了解。

结果

在本研究中,我们系统地分析了硬骨鱼多个组织、物种、时间点和分辨率的转录组数据。首先,我们使用tau指数法鉴定了肌间骨特异性表达基因。通过对肌腱发育过程的跨物种比较,我们发现候选基因主要富集于细胞外基质组织、骨化、血管生成调节及其他相关过程。我们还发现,其中一些候选基因在缺乏肌间骨的runx2b斑马鱼中异常表达。为了阐明肌间骨形成过程中细胞分化的轨迹,我们证明了在runx2b斑马鱼中,肌隔干细胞可分化为成骨细胞、成纤维细胞和肌腱细胞。然而,在runx2b斑马鱼中,肌隔干细胞向成骨细胞的分化受到抑制,而向clec3bb+肌腱细胞和成纤维细胞的分化增强。此外,runx2b缺陷导致clec3bb+肌腱细胞簇中clec3bb表达上调。值得注意的是,在runx2b斑马鱼的细胞分化和基因表达中观察到了补偿效应,这表明runx2b和候选基因,如clec3bb,参与了肌间骨发育的基因网络。

结论

这些结果阐明了硬骨鱼肌腱骨化过程中的细胞分化过程,并鉴定出参与该过程的关键因子clec3bb。这些发现为理解硬骨鱼的肌腱骨化以及进一步研究哺乳动物的肌腱骨化提供了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4beb/11689531/a0b6bd907b93/12915_2024_2103_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4beb/11689531/f71916c50a25/12915_2024_2103_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4beb/11689531/fed01f053d09/12915_2024_2103_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4beb/11689531/d15a585cbcc8/12915_2024_2103_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4beb/11689531/cd4b66098d58/12915_2024_2103_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4beb/11689531/0abd254b1528/12915_2024_2103_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4beb/11689531/db14b04a6137/12915_2024_2103_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4beb/11689531/a0b6bd907b93/12915_2024_2103_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4beb/11689531/f71916c50a25/12915_2024_2103_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4beb/11689531/fed01f053d09/12915_2024_2103_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4beb/11689531/d15a585cbcc8/12915_2024_2103_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4beb/11689531/cd4b66098d58/12915_2024_2103_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4beb/11689531/0abd254b1528/12915_2024_2103_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4beb/11689531/db14b04a6137/12915_2024_2103_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4beb/11689531/a0b6bd907b93/12915_2024_2103_Fig7_HTML.jpg

相似文献

1
Integrated transcriptomic analysis reveals evolutionary and developmental characteristics of tendon ossification in teleost.综合转录组分析揭示了硬骨鱼肌腱骨化的进化和发育特征。
BMC Biol. 2024 Dec 31;22(1):304. doi: 10.1186/s12915-024-02103-9.
2
Single-cell transcriptomes and mutants reveal the genetic signatures of intermuscular bone formation in zebrafish.单细胞转录组和突变体揭示了斑马鱼肌间骨形成的遗传特征。
Natl Sci Rev. 2022 Aug 2;9(11):nwac152. doi: 10.1093/nsr/nwac152. eCollection 2022 Nov.
3
Development of Teleost Intermuscular Bones Undergoing Intramembranous Ossification Based on Histological-Transcriptomic-Proteomic Data.硬骨鱼肌间骨软骨内骨化的发育:基于组织学-转录组学-蛋白质组学数据。
Int J Mol Sci. 2019 Sep 22;20(19):4698. doi: 10.3390/ijms20194698.
4
Effect of runx2b deficiency in intermuscular bones on the regulatory network of lncRNA-miRNA-mRNA.Runx2b 缺陷对肌间骨 lncRNA-miRNA-mRNA 调控网络的影响。
Comp Biochem Physiol Part D Genomics Proteomics. 2024 Mar;49:101171. doi: 10.1016/j.cbd.2023.101171. Epub 2023 Dec 4.
5
Integrated single-cell transcriptome and comparative genome analysis reveals the origin of intermuscular bones in zebrafish.整合单细胞转录组和比较基因组分析揭示斑马鱼肌间骨的起源
Int J Biol Macromol. 2025 May;308(Pt 1):142397. doi: 10.1016/j.ijbiomac.2025.142397. Epub 2025 Mar 22.
6
Comparison of Myosepta Development and Transcriptome Profiling between Blunt Snout Bream with and Tilapia without Intermuscular Bones.有肌间骨团头鲂与无肌间骨罗非鱼肌隔发育及转录组分析比较
Biology (Basel). 2021 Dec 10;10(12):1311. doi: 10.3390/biology10121311.
7
Transcriptomic analysis of intermuscular bone development in barbel steed (Hemibarbus labeo).肌肉间骨发育的转录组分析在鱲(Hemibarbus labeo)中。
Comp Biochem Physiol Part D Genomics Proteomics. 2022 Dec;44:101030. doi: 10.1016/j.cbd.2022.101030. Epub 2022 Nov 2.
8
Identification of a new pebp2alphaA2 isoform from zebrafish runx2 capable of inducing osteocalcin gene expression in vitro.从斑马鱼runx2中鉴定出一种新的pebp2alphaA2亚型,其能够在体外诱导骨钙素基因表达。
J Bone Miner Res. 2005 Aug;20(8):1440-53. doi: 10.1359/JBMR.050318. Epub 2005 Mar 21.
9
Screening for IBs-relative genes by transcriptome analysis and generation IBs-less mutants in Culter alburnus.通过转录组分析筛选与 IBs 相关的基因,并在白甲鱼中产生缺乏 IBs 的突变体。
Comp Biochem Physiol Part D Genomics Proteomics. 2023 Sep;47:101106. doi: 10.1016/j.cbd.2023.101106. Epub 2023 Jun 23.
10
Single-Cell Integration Analysis of Heterotopic Ossification and Fibrocartilage Developmental Lineage: Endoplasmic Reticulum Stress Effector Xbp1 Transcriptionally Regulates the Notch Signaling Pathway to Mediate Fibrocartilage Differentiation.异位骨化和成纤维软骨发育谱系的单细胞整合分析:内质网应激效应因子 Xbp1 转录调控 Notch 信号通路介导成纤维软骨分化。
Oxid Med Cell Longev. 2021 Oct 26;2021:7663366. doi: 10.1155/2021/7663366. eCollection 2021.

本文引用的文献

1
Effect of runx2b deficiency in intermuscular bones on the regulatory network of lncRNA-miRNA-mRNA.Runx2b 缺陷对肌间骨 lncRNA-miRNA-mRNA 调控网络的影响。
Comp Biochem Physiol Part D Genomics Proteomics. 2024 Mar;49:101171. doi: 10.1016/j.cbd.2023.101171. Epub 2023 Dec 4.
2
Maternal dominance contributes to subgenome differentiation in allopolyploid fishes.母性优势导致了异源多倍体鱼类的亚基因组分化。
Nat Commun. 2023 Dec 15;14(1):8357. doi: 10.1038/s41467-023-43740-y.
3
Verteporfin attenuates trauma-induced heterotopic ossification of Achilles tendon by inhibiting osteogenesis and angiogenesis involving YAP/β-catenin signaling.
维替泊芬通过抑制成骨和血管生成(涉及 YAP/β-catenin 信号通路)来减轻创伤性跟腱异位骨化。
FASEB J. 2023 Jul;37(7):e23057. doi: 10.1096/fj.202300568R.
4
NLRP3-Dependent Crosstalk between Pyroptotic Macrophage and Senescent Cell Orchestrates Trauma-Induced Heterotopic Ossification During Aberrant Wound Healing.NLRP3 依赖性焦亡巨噬细胞与衰老细胞的串扰调控异常伤口愈合中创伤诱导的异位骨化
Adv Sci (Weinh). 2023 Jul;10(19):e2207383. doi: 10.1002/advs.202207383. Epub 2023 May 19.
5
Single-cell transcriptomes and mutants reveal the genetic signatures of intermuscular bone formation in zebrafish.单细胞转录组和突变体揭示了斑马鱼肌间骨形成的遗传特征。
Natl Sci Rev. 2022 Aug 2;9(11):nwac152. doi: 10.1093/nsr/nwac152. eCollection 2022 Nov.
6
Transcriptomic analysis of intermuscular bone development in barbel steed (Hemibarbus labeo).肌肉间骨发育的转录组分析在鱲(Hemibarbus labeo)中。
Comp Biochem Physiol Part D Genomics Proteomics. 2022 Dec;44:101030. doi: 10.1016/j.cbd.2022.101030. Epub 2022 Nov 2.
7
RSPO2 defines a distinct undifferentiated progenitor in the tendon/ligament and suppresses ectopic ossification.RSPO2在肌腱/韧带中定义了一种独特的未分化祖细胞,并抑制异位骨化。
Sci Adv. 2022 Aug 19;8(33):eabn2138. doi: 10.1126/sciadv.abn2138.
8
Positive selection and heat-response transcriptomes reveal adaptive features of the Brassicaceae desert model, Anastatica hierochuntica.正选择和热响应转录组揭示了十字花科沙漠模式植物——海乳草的适应性特征。
New Phytol. 2022 Nov;236(3):1006-1026. doi: 10.1111/nph.18411. Epub 2022 Aug 26.
9
C-type lectin domain-containing protein CLEC3A regulates proliferation, regeneration and maintenance of nucleus pulposus cells.C 型凝集素结构域蛋白 CLEC3A 调节髓核细胞的增殖、再生和维持。
Cell Mol Life Sci. 2022 Jul 21;79(8):435. doi: 10.1007/s00018-022-04477-x.
10
Transcriptomic Analysis Provides Insights to Reveal the Function Related to the Development of Intermuscular Bones in Zebrafish.转录组分析为揭示斑马鱼肌间骨发育相关功能提供了见解。
Front Cell Dev Biol. 2022 May 12;10:821471. doi: 10.3389/fcell.2022.821471. eCollection 2022.