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一种使用QuPath和基于StarDist模型的口腔鳞状细胞癌肿瘤浸润淋巴细胞自动评估的数字工作流程。

A Digital Workflow for Automated Assessment of Tumor-Infiltrating Lymphocytes in Oral Squamous Cell Carcinoma Using QuPath and a StarDist-Based Model.

作者信息

Crispino Angela, Varricchio Silvia, Ilardi Gennaro, Russo Daniela, Di Crescenzo Rosa Maria, Staibano Stefania, Merolla Francesco

机构信息

Department of Advanced Biomedical Sciences, Pathology Unit, University of Naples "Federico II", Naples, Italy.

Department of Medicine and Health Sciences "V. Tiberio", University of Molise, Campobasso, Italy.

出版信息

Pathologica. 2024 Dec;116(6):390-403. doi: 10.32074/1591-951X-1069.

Abstract

The search for reliable prognostic markers in oral squamous cell carcinoma (OSCC) remains a critical need. Tumor-infiltrating lymphocytes (TILs), particularly T lymphocytes, play a pivotal role in the immune response against tumors and are strongly correlated with favorable prognoses. Computational pathology has proven highly effective for histopathological image analysis, automating tasks such as cell detection, classification, and segmentation. In the present study, we developed a StarDist-based model to automatically detect T lymphocytes in hematoxylin and eosin (H&E)-stained whole-slide images (WSIs) of OSCC, bypassing the need for traditional immunohistochemistry (IHC). Using QuPath, we generated training datasets from annotated slides, employing IHC as the ground truth. Our model was validated on Cancer Genome Atlas-derived OSCC images, and survival analyses demonstrated that higher TIL densities correlated with improved patient outcomes. This work introduces an efficient, AI-powered workflow for automated immune profiling in OSCC, offering a reproducible and scalable approach for diagnostic and prognostic applications.

摘要

寻找口腔鳞状细胞癌(OSCC)可靠的预后标志物仍然至关重要。肿瘤浸润淋巴细胞(TILs),尤其是T淋巴细胞,在抗肿瘤免疫反应中起关键作用,且与良好预后密切相关。计算病理学已被证明在组织病理学图像分析中非常有效,能够自动执行细胞检测、分类和分割等任务。在本研究中,我们开发了一种基于StarDist的模型,用于自动检测OSCC苏木精和伊红(H&E)染色全切片图像(WSIs)中的T淋巴细胞,无需传统免疫组织化学(IHC)。我们使用QuPath从注释切片生成训练数据集,将IHC作为金标准。我们的模型在来自癌症基因组图谱的OSCC图像上得到验证,生存分析表明更高的TIL密度与患者更好的预后相关。这项工作引入了一种高效的、人工智能驱动的工作流程,用于OSCC的自动免疫分析,为诊断和预后应用提供了一种可重复且可扩展的方法。

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