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深入研究棕色固氮菌细菌铁蛋白中的FeS血红素键:量子力学/分子力学及局域模式分析

A Closer Look at the FeS Heme Bonds in Azotobacter vinelandii Bacterioferritin: QM/MM and Local Mode Analysis.

作者信息

Freindorf Marek, Kraka Elfi

机构信息

Chemistry Department, Southern Methodist University, Dallas, Texas, USA.

出版信息

J Comput Chem. 2025 Jan 5;46(1):e70012. doi: 10.1002/jcc.70012.

Abstract

Using the QM/MM methodology and a local mode analysis, we investigated a character and a strength of FeS bonds of heme groups in oxidized and reduced forms of Bacterioferritin from Azotobacter vinelandii. The strength of the FeS bonds was correlated with a bond length, an energy density at a bond critical point, and a charge difference of the F and S atoms. Changing the oxidation state from ferrous to ferric generally makes the FeS bonds weaker, longer, more covalent, and more polar. We also investigated the SFeS bond bending and found that the stronger FeS bond, generally makes the SFeS bond bending stiffer, which could play a key role in the balance between ferric and ferrous oxidation states and related biological activities.

摘要

利用量子力学/分子力学(QM/MM)方法和局域模式分析,我们研究了来自棕色固氮菌的细菌铁蛋白氧化态和还原态中血红素基团的FeS键的性质和强度。FeS键的强度与键长、键临界点处的能量密度以及F和S原子的电荷差相关。将氧化态从亚铁变为铁通常会使FeS键更弱、更长、更具共价性且更具极性。我们还研究了SFeS键的弯曲,发现较强的FeS键通常会使SFeS键的弯曲更硬,这可能在铁的三价和二价氧化态之间的平衡以及相关生物活性中起关键作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/616b/11697534/77425da389a8/JCC-46-0-g003.jpg

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