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哮喘中的拷贝数变异:一项综合综述。

Copy Number Variation in Asthma: An Integrative Review.

作者信息

Garcia Fernanda Mariano, de Sousa Valdemir Pereira, Silva-Dos-Santos Priscila Pinto E, Fernandes Izadora Silveira, Serpa Faradiba Sarquis, de Paula Flávia, Mill José Geraldo, Bueno Maria Rita Passos, Errera Flávia Imbroisi Valle

机构信息

Postgraduate Program in Biochemistry, Federal University of Espírito Santo (UFES), Vitória, Espírito Santo, Brazil.

Postgraduate Program in Biotechnology, Federal University of Espírito Santo (UFES), Vitória, Espírito Santo, Brazil.

出版信息

Clin Rev Allergy Immunol. 2025 Jan 4;68(1):4. doi: 10.1007/s12016-024-09015-0.

DOI:10.1007/s12016-024-09015-0
PMID:39755867
Abstract

Asthma is a complex disease with varied clinical manifestations resulting from the interaction between environmental and genetic factors. While chronic airway inflammation and hyperresponsiveness are central features, the etiology of asthma is multifaceted, leading to a diversity of phenotypes and endotypes. Although most research into the genetics of asthma focused on the analysis of single nucleotide polymorphisms (SNPs), studies highlight the importance of structural variations, such as copy number variations (CNVs), in the inheritance of complex characteristics, but their role has not yet been fully elucidated in asthma. In this context, an integrative review was conducted to identify the genes and pathways involved, the location, size, and classes of CNVs, as well as their contribution to asthma risk, severity, control, and response to treatment. As a result of the review, 16 articles were analyzed, from different types of observational studies, such as case-control, cohort studies and genotyped-proband or trios design, that have been carried out in populations from different countries, ethnicities, and ages. Chromosomes 12 and 17 were the most studied in three publications each. CNVs located on 12 chromosomes were associated with asthma, the majority being found on chromosome 6p and 17q, of the deletion type, encompassing 30 different coding-protein genes and one pseudogene region. Six genes with CNVs were identified as significant expression quantitative locus (eQTLs) with mean expression in asthma-related tissues, such as the lung and whole blood. The phenotypic variability of asthma may hinder the clinical application of these findings, but the research shows the importance of investigating these genetic variations as possible biomarkers in asthma patients.

摘要

哮喘是一种复杂的疾病,由环境和遗传因素相互作用导致多种临床表现。虽然慢性气道炎症和高反应性是其核心特征,但哮喘的病因是多方面的,导致了多种表型和内型。尽管大多数哮喘遗传学研究集中在单核苷酸多态性(SNP)分析上,但研究强调了结构变异(如拷贝数变异,CNV)在复杂性状遗传中的重要性,但其在哮喘中的作用尚未完全阐明。在此背景下,进行了一项综合综述,以确定涉及的基因和途径、CNV的位置、大小和类别,以及它们对哮喘风险、严重程度、控制和治疗反应的影响。综述结果分析了16篇文章,这些文章来自不同类型的观察性研究,如病例对照研究、队列研究以及在不同国家、种族和年龄人群中开展的基因分型先证者或三联体设计研究。在三篇文章中,12号和17号染色体研究最多。位于12条染色体上的CNV与哮喘相关,大多数位于6p和17q染色体上,为缺失型,包含30个不同的编码蛋白基因和一个假基因区域。六个具有CNV的基因被确定为显著表达数量性状位点(eQTL),在哮喘相关组织(如肺和全血)中具有平均表达。哮喘的表型变异性可能会阻碍这些研究结果的临床应用,但该研究表明,在哮喘患者中研究这些基因变异作为可能的生物标志物具有重要意义。

相似文献

1
Copy Number Variation in Asthma: An Integrative Review.哮喘中的拷贝数变异:一项综合综述。
Clin Rev Allergy Immunol. 2025 Jan 4;68(1):4. doi: 10.1007/s12016-024-09015-0.
2
Copy number variation prevalence in known asthma genes and their impact on asthma susceptibility.已知哮喘基因中的拷贝数变异频率及其对哮喘易感性的影响。
Clin Exp Allergy. 2013 Apr;43(4):455-62. doi: 10.1111/cea.12060.
3
Expression quantitative trait locus fine mapping of the 17q12-21 asthma locus in African American children: a genetic association and gene expression study.17q12-21 哮喘基因座在非裔美国儿童中的表达数量性状基因座精细定位:一项遗传关联和基因表达研究。
Lancet Respir Med. 2020 May;8(5):482-492. doi: 10.1016/S2213-2600(20)30011-4.
4
Association between ORMDL3, IL1RL1 and a deletion on chromosome 17q21 with asthma risk in Australia.澳大利亚人哮喘风险与 ORMDL3、IL1RL1 及 17q21 染色体缺失的关联。
Eur J Hum Genet. 2011 Apr;19(4):458-64. doi: 10.1038/ejhg.2010.191. Epub 2010 Dec 8.
5
Whole-genome sequencing of individuals from a founder population identifies candidate genes for asthma.对创始人群个体进行全基因组测序可确定哮喘的候选基因。
PLoS One. 2014 Aug 12;9(8):e104396. doi: 10.1371/journal.pone.0104396. eCollection 2014.
6
Genome-wide expression quantitative trait loci analysis in asthma.哮喘的全基因组表达数量性状基因座分析。
Curr Opin Allergy Clin Immunol. 2013 Oct;13(5):487-94. doi: 10.1097/ACI.0b013e328364e951.
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Combining genomewide association study and lung eQTL analysis provides evidence for novel genes associated with asthma.结合全基因组关联研究和肺表达定量性状位点分析为与哮喘相关的新基因提供了证据。
Allergy. 2016 Dec;71(12):1712-1720. doi: 10.1111/all.12990. Epub 2016 Aug 22.
8
The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.在一个基因座上,拷贝数变异 (CNVs) 和单核苷酸多态性 (SNPs) 的共存可能导致 SNP 与疾病关联的显著性计算失真。
Hum Genet. 2018 Jul;137(6-7):553-567. doi: 10.1007/s00439-018-1910-3. Epub 2018 Jul 17.
9
Rare copy number variants implicated in posterior urethral valves.与后尿道瓣膜相关的罕见拷贝数变异。
Am J Med Genet A. 2016 Mar;170(3):622-33. doi: 10.1002/ajmg.a.37493. Epub 2015 Dec 14.
10
17q12-21 variants are associated with asthma and interact with active smoking in an adult population from the United Kingdom.17q12-21 变异与哮喘有关,并与英国成年人群中的主动吸烟相互作用。
Ann Allergy Asthma Immunol. 2012 Jun;108(6):402-411.e9. doi: 10.1016/j.anai.2012.03.002. Epub 2012 Apr 11.

本文引用的文献

1
Innate immune responses are increased in children with acute asthma exacerbation.先天性免疫反应在急性哮喘加重的儿童中增强。
Pediatr Allergy Immunol. 2024 Jun;35(6):e14173. doi: 10.1111/pai.14173.
2
Machine Learning Prediction of Treatment Response to Inhaled Corticosteroids in Asthma.机器学习对哮喘患者吸入性糖皮质激素治疗反应的预测
J Pers Med. 2024 Feb 25;14(3):246. doi: 10.3390/jpm14030246.
3
On the core segmentation algorithms of copy number variation detection tools.基于拷贝数变异检测工具的核心分割算法。
Brief Bioinform. 2024 Jan 22;25(2). doi: 10.1093/bib/bbae022.
4
Genetic outcomes in children with developmental language disorder: a systematic review.发育性语言障碍儿童的遗传结局:一项系统综述。
Front Pediatr. 2024 Jan 17;12:1315229. doi: 10.3389/fped.2024.1315229. eCollection 2024.
5
A unifying model that explains the origins of human inverted copy number variants.一个统一的模型,解释了人类倒位拷贝数变异的起源。
PLoS Genet. 2024 Jan 4;20(1):e1011091. doi: 10.1371/journal.pgen.1011091. eCollection 2024 Jan.
6
Non-coding RNA regulation of macrophage function in asthma.非编码 RNA 调控哮喘中巨噬细胞功能。
Cell Signal. 2023 Dec;112:110926. doi: 10.1016/j.cellsig.2023.110926. Epub 2023 Oct 15.
7
Epigenome-wide DNA methylation association study of circulating IgE levels identifies novel targets for asthma.全基因组 DNA 甲基化关联研究表明,循环 IgE 水平与哮喘的发生存在关联,并鉴定出哮喘的新靶点。
EBioMedicine. 2023 Sep;95:104758. doi: 10.1016/j.ebiom.2023.104758. Epub 2023 Aug 18.
8
The crosslinks between ferroptosis and autophagy in asthma.哮喘中铁死亡与自噬的交联。
Front Immunol. 2023 Mar 29;14:1140791. doi: 10.3389/fimmu.2023.1140791. eCollection 2023.
9
Decoding the genetic and epigenetic basis of asthma.解码哮喘的遗传和表观遗传基础。
Allergy. 2023 Apr;78(4):940-956. doi: 10.1111/all.15666. Epub 2023 Feb 15.
10
Transcriptome and pan-cancer system analysis identify PM2.5-induced stanniocalcin 2 as a potential prognostic and immunological biomarker for cancers.转录组和泛癌系统分析确定PM2.5诱导的骨钙素2是癌症潜在的预后和免疫生物标志物。
Front Genet. 2023 Jan 6;13:1077615. doi: 10.3389/fgene.2022.1077615. eCollection 2022.